Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05969 ATGGTTCTTTCAATACCACAATCAATCCTATCAACCAACACCCAAAAAATGGATTTTATCCTAAACTACCTTAACATCACTACAATAGCATTCATTTCTCTAATTTCCCTCCTTTTCTTTGTGTTTCGTTTTTCCAAAGTTTCTCATACCAAACAACCTCCTATAATTTCAGGGTCATGGCCATTACTAGGTCACCTTCCTCTAATGAGAAATACACAAACACCCCACAAAACCTTAGGTTGCTTAGTTGATAAATATGGACCTATATTCACAATCAAGCTTGGTGCTACAAATGCTTTGGTACTTAGCAATTCGGAATTAGCCAAAGAATGTTTCACTAAAAACGATATTGTCGTTTCATCGCGCCCCAAACCCGTGGCGGTTGAGCTTATGTCCTACAATCAAGCTTTCATTGGTTGGGCACCATATGGAGCATATTGGCGTCAATTAAGGAAAATTGTCACACTAGAGATTCTCTCTAATAGAAGAATTGAACTACTGAATCACATCCGTGTTTCAGAAGTTCAAACTTCGATTAAAGAATTGGTGAACACTTGGTCATATCAAATGTCGTTAAGTACTAATGAGATCAATAATAAACTCGCTAATACTAATGATTATGTGTCGGTCGAGTTGAAGAAATGGTTTGCACAATTGACATTAAACATGGTACTGAGAATGGTTGTTGGAAAGAGATGTTTTGGTGATGTGGATGAGGAAAATAAGGAAGAAGCAAAGATATTTTTGGAAAATATAAGAGATTTTATGCGTTTGATTGGAACATTTACGGTGGGAGATGGTGTACCATTTTTAAAACGGTTGGATTTAGGAGGTCATGAAAAGGAAATGAAAAAATGTGCAAGAAAATTTGATGAAATGTTGAATGAGTGGTTGGAAGAGCATCGTGTAAAGAAGGGTTTAGGTAGTGATGATAAGGTTGTGGGGGAAAGAGATTTCATGGATGCAATGCTTTTGGTTCTTAAAGACAAACCAATTGAGGGGTTTGATGTAGATACCATAATCAAAGCCACAACATTGGAGTTGATTCTAGGAGGAAGTGACACAACCGCAGGAACACTTACATGGGCAATGTGTCTTCTATTAAAACATCCTCATATCTTAGAAAAAGCAAAAGTAGAACTTAACACACACATTGGAAAAGAAAGATGCGTAAATGAATCAGATATCAATAAATTAGTATATCTTCAAGCTATAATCAAAGAAACACTAAGATTATATCCACCAGCTCCGTTTTCATCACCTCGTGAATTCACAGAAGATTGTACAATAGGTGGATATCATATCAAAAAAGGAACTCGATTAATGCCAAATTTTTGGAAGATTCATAGAGATCCTAGTGTTTGGCCAAATCCATTAGAATTCAACCCTGAAAGGTTTCTTACTTCTCACAAAGATGTTGATGTTAGGGGTCAAAATTTTGAGTTGTTACCATTTGGAAGTGGGAGAAGGATGTGTGCTGGAATGTCCCTTGGTTTGAATATGGTTCATTATATTCTAGCTAGTTTTTTGCATTCTTTTGAAATATTGAATCCATCTCCTGAATCAATTGATGATACTGAAGTTCTTGAATTTGTCACCACTAAAGCTACTCCACTTGAGGTTTTGGTTAAACCCTTTTTGACTTTCAAATGTTATGAAACTATGTGA 1668 0.3591 MVLSIPQSILSTNTQKMDFILNYLNITTIAFISLISLLFFVFRFSKVSHTKQPPIISGSWPLLGHLPLMRNTQTPHKTLGCLVDKYGPIFTIKLGATNALVLSNSELAKECFTKNDIVVSSRPKPVAVELMSYNQAFIGWAPYGAYWRQLRKIVTLEILSNRRIELLNHIRVSEVQTSIKELVNTWSYQMSLSTNEINNKLANTNDYVSVELKKWFAQLTLNMVLRMVVGKRCFGDVDEENKEEAKIFLENIRDFMRLIGTFTVGDGVPFLKRLDLGGHEKEMKKCARKFDEMLNEWLEEHRVKKGLGSDDKVVGERDFMDAMLLVLKDKPIEGFDVDTIIKATTLELILGGSDTTAGTLTWAMCLLLKHPHILEKAKVELNTHIGKERCVNESDINKLVYLQAIIKETLRLYPPAPFSSPREFTEDCTIGGYHIKKGTRLMPNFWKIHRDPSVWPNPLEFNPERFLTSHKDVDVRGQNFELLPFGSGRRMCAGMSLGLNMVHYILASFLHSFEILNPSPESIDDTEVLEFVTTKATPLEVLVKPFLTFKCYETM 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05969 555 Gene3D Cytochrome P450 47 547 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 FunFam Cytochrome P450 82C4 43 544 - -
Vifa1g05969 555 SUPERFAMILY Cytochrome P450 59 545 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 CDD CYP82 87 545 - -
Vifa1g05969 555 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 485 494 IPR017972 GO:0005506|GO:0016705
Vifa1g05969 555 PRINTS E-class P450 group I signature 360 386 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS E-class P450 group I signature 492 515 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS E-class P450 group I signature 107 128 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS E-class P450 group I signature 482 492 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS E-class P450 group I signature 83 102 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS E-class P450 group I signature 340 357 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS E-class P450 group I signature 444 468 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS E-class P450 group I signature 403 421 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS P450 superfamily signature 483 492 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS P450 superfamily signature 404 415 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS P450 superfamily signature 351 368 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PRINTS P450 superfamily signature 492 503 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 Pfam Cytochrome P450 59 536 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05969 555 PANTHER CYTOCHROME P450 82C3-RELATED 34 552 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05969 Vifa-Chr1 933115331 933117314 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05969 31 545 Cytochrome P450 AT4G31940 46.463 4.73e-161 468
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05969 - - gmx:100789386 684.485