Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05968 ATGGGTCGGAAGAACGGCGCCGTTTCAGCCAGCGAACCAGTCGCCGAACAACAAACCCACAACACCACCACCCAACTCGAATCCTCGAAGAAGAAGAACAAAAAGAACAAACACAACCTCCAAAACGAAGAAAACACTCCCAAAAGAAGGCACGAAGAACTCAACGCTGAAAACGACGCCGAATCGGAGAAGAAGAGTAAAAAGAAGAAAAAACACAACAAATCGAAAGACAACGGGGAGGAAAACGGCACTGGTAACGGCGCCGATACTGTTTCGGCGTCGGATGAACCTATTGTTGTTACCGGAAAGAATGCCGGCGATGAAAAATATGCAGCTGTTAAGAGTTTTGTTGGTTCGGGGCTTCCTGATAACGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCGTTTTTGTTGGACGGTCGTGATTTGATTGGAATTGCAGCCACTGGTTCAGGCAAGACACTTGCTTTTGGATTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAGTAAGGTTTCCTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACAAGGGAGCTAGCTCAACAAATATCAGATGTACTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGACCTCAAATCTCTGCATTGAAATCTGGCATTGATATTGTTATTGGAACCCCTGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATTCTTGGTCAGACATGTTCAGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGCTAGCAGTTCATCACTTAGCGCAGGAATTTATGGATCCCAACCCTGTTAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTCTTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTATTAGAGAAGTACCATAAATCTCAGAAGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGTGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAGGCTGTGTCAATTAGTGGGGACAAATCACAGCATGAACGCACAAAGGCGCTGTCATTGTTCAAGAATGGAACCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTTTAGTTTTCCTCTAACTCTAGAAGATTACGTTCATAGAATTGGGCGAACAGGACGAGCTGGGAAGAAAGGTGTTGCCCATACATTCTTCACACATCTGAATAAGGGACTTGCTGGAGAGCTTGTGAATGTTTTAAGAGAAGCAGGGCAAGTTGTGCCAGATGATCTTTTGAAATTTGGCACACACGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTGCTGTTGATGCTCCAAAGTCAAAAAAAATAACATTCGACTCTGACGATGAAGACTAA 1602 0.437 MGRKNGAVSASEPVAEQQTHNTTTQLESSKKKNKKNKHNLQNEENTPKRRHEELNAENDAESEKKSKKKKKHNKSKDNGEENGTGNGADTVSASDEPIVVTGKNAGDEKYAAVKSFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKSKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTSKGPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGTCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIAVDAPKSKKITFDSDDED 533
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05968 533 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 334 497 IPR001650 -
Vifa1g05968 533 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Vifa1g05968 533 Gene3D - 325 500 IPR027417 -
Vifa1g05968 533 FunFam ATP-dependent RNA helicase RhlB 324 501 - -
Vifa1g05968 533 CDD DEADc 130 322 - -
Vifa1g05968 533 MobiDBLite consensus disorder prediction 1 96 - -
Vifa1g05968 533 MobiDBLite consensus disorder prediction 11 26 - -
Vifa1g05968 533 Pfam DEAD/DEAH box helicase 137 306 IPR011545 GO:0003676|GO:0005524
Vifa1g05968 533 Gene3D - 56 324 IPR027417 -
Vifa1g05968 533 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 321 IPR014001 -
Vifa1g05968 533 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 66 493 - -
Vifa1g05968 533 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 469 IPR027417 -
Vifa1g05968 533 Coils Coil 51 71 - -
Vifa1g05968 533 SMART helicmild6 377 458 IPR001650 -
Vifa1g05968 533 SMART ultradead3 131 338 IPR014001 -
Vifa1g05968 533 MobiDBLite consensus disorder prediction 37 66 - -
Vifa1g05968 533 CDD SF2_C_DEAD 335 467 - -
Vifa1g05968 533 Coils Coil 26 46 - -
Vifa1g05968 533 Pfam Helicase conserved C-terminal domain 350 458 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05968 Vifa-Chr1 933113635 933117910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05968 113 466 Eukaryotic Initiation Factors Gene Family AT3G19760 33.427 6.54e-54 186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05968 K14811 - gmx:100305353 814.298