Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05967 ATGGGTCGGAAGAACGGCGCCGTTTCAGCCAGCGAACCAGTCGCCGAACAACAAACCCACAACACCACCACCCAACTCGAATCCTCGAAGAAGAAGAACAAAAAGAACAAACACAACCTCCAAAACGAAGAAAACACTCCCAAAAGAAGGCACGAAGAACTCAACGCTGAAAACGACGCCGAATCGGAGAAGAAGAGTAAAAAGAAGAAAAAACACAACAAATCGAAAGACAACGGGGAGGAAAACGGCACTGGTAACGGCGCCGATACTGTTTCGGCGTCGGATGAACCTATTGTTGTTACCGGAAAGAATGCCGGCGATGAAAAATATGCAGCTGTTAAGAGTTTTGTTGGTTCGGGGCTTCCTGATAACGTGCTTGAATGTTGTAAGGGTTTTGAGAAACCTTCTCCGATTCAATCACGAGCTTGGCCGTTTTTGTTGGACGGTCGTGATTTGATTGGAATTGCAGCCACTGGTTCAGGCAAGACACTTGCTTTTGGATTACCAGCTATTATGCATGTTTTGAATAAGCGGAAGAGTAAGGTTTCCTCCAAGGGTCGGAATCCTCTTTGCCTTATGCTCTCTCCTACAAGGGAGCTAGCTCAACAAATATCAGATGTACTGTGTGATGCTGGTAAATCTTGTGGTGTGGAATCAGTTTGTTTGTATGGTGGAACCTCCAAAGGACCTCAAATCTCTGCATTGAAATCTGGCATTGATATTGTTATTGGAACCCCTGGTCGTATTCAAGATCTGGTTGAAATGGGTATCTGTCGCCTACAAGAAGTATCTTTTGTGGTCCTTGATGAAGCAGATCGGATGCTTGACATGGGTTTTGAACAAATAGTCCGCTCTATTCTTGGTCAGACATGTTCAGTTCGTCAAATGGTTATGTTCAGTGCTACATGGCCGCTAGCAGTTCATCACTTAGCGCAGGAATTTATGGATCCCAACCCTGTTAAAGTTGTTGTAGGCTCAGAGGATTTATCTGCCAATCATGATGTCATGCAAATAGTTGAGGTCTTGGATGAGCGTTTACGTGATAAGCGCCTGCTTGCTTTATTAGAGAAGTACCATAAATCTCAGAAGTATGTCTTCATGAATCGAGTATTGGTTTTTGTTTTGTACAAATGGGAAACCACACGTGTTGAAAAAATGCTTCAACAAGGGGGTTGGAAGGCTGTGTCAATTAGTGGGGACAAATCACAGCATGAACGCACAAAGGCGCTGTCATTGTTCAAGAATGGAACCTGTCCTTTGATGATTGCTACTGATGTGGCCGCACGAGGATTGGATATTCCAGATGTTGAAGTAGTGATAAACTTTAGTTTTCCTCTAACTCTAGAAGATTACGTTCATAGAATTGGGCGAACAGGACGAGCTGGGAAGAAAGGTGTTGCCCATACATTCTTCACACATCTGAATAAGGGACTTGCTGGAGAGCTTGTGAATGTTTTAAGAGAAGCAGGGCAAGTTGTGCCAGATGATCTTTTGAAATTTGGCACACACGTAAAGAAAAAGGAGTCCAAGCTTTATGGGGCTCACTTCAAGGAAATTGCTGTTGATGCTCCAAAGTCAAAAAAAATAACATTCGACTCTGACGATGAAGACTAA 1614 0.4362 MGRKNGAVSASEPVAEQQTHNTTTQLESSKKKNKKNKHNLQNEENTPKRRHEELNAENDAESEKKSKKKKKHNKSKDNGEENGTGNGADTVSASDEPIVVTGKNAGDEKYAAVKSFVGSGLPDNVLECCKGFEKPSPIQSRAWPFLLDGRDLIGIAATGSGKTLAFGLPAIMHVLNKRKSKVSSKGRNPLCLMLSPTRELAQQISDVLCDAGKSCGVESVCLYGGTSKGPQISALKSGIDIVIGTPGRIQDLVEMGICRLQEVSFVVLDEADRMLDMGFEQIVRSILGQTCSVRQMVMFSATWPLAVHHLAQEFMDPNPVKVVVGSEDLSANHDVMQIVEVLDERLRDKRLLALLEKYHKSQKYVFMNRVLVFVLYKWETTRVEKMLQQGGWKAVSISGDKSQHERTKALSLFKNGTCPLMIATDVAARGLDIPDVEVVINFSFPLTLEDYVHRIGRTGRAGKKGVAHTFFTHLNKGLAGELVNVLREAGQVVPDDLLKFGTHVKKKESKLYGAHFKEIAVDAPKSKKITFDSDDED 537
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05967 537 SMART helicmild6 381 462 IPR001650 -
Vifa1g05967 537 Gene3D - 325 504 IPR027417 -
Vifa1g05967 537 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 267 275 IPR000629 -
Vifa1g05967 537 FunFam ATP-dependent RNA helicase RhlB 324 505 - -
Vifa1g05967 537 CDD DEADc 130 322 - -
Vifa1g05967 537 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 359 501 IPR001650 -
Vifa1g05967 537 MobiDBLite consensus disorder prediction 1 96 - -
Vifa1g05967 537 MobiDBLite consensus disorder prediction 11 26 - -
Vifa1g05967 537 CDD SF2_C_DEAD 335 471 - -
Vifa1g05967 537 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 143 321 IPR014001 -
Vifa1g05967 537 Gene3D - 56 324 IPR027417 -
Vifa1g05967 537 Pfam Helicase conserved C-terminal domain 351 462 IPR001650 -
Vifa1g05967 537 PANTHER ATP-DEPENDENT RNA HELICASE DBP3 66 497 - -
Vifa1g05967 537 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 188 473 IPR027417 -
Vifa1g05967 537 Coils Coil 51 71 - -
Vifa1g05967 537 SMART ultradead3 131 338 IPR014001 -
Vifa1g05967 537 MobiDBLite consensus disorder prediction 37 66 - -
Vifa1g05967 537 Pfam DEAD/DEAH box helicase 137 306 IPR011545 GO:0003676|GO:0005524
Vifa1g05967 537 Coils Coil 26 46 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05967 Vifa-Chr1 933113635 933117910 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05967 113 470 Eukaryotic Initiation Factors Gene Family AT3G19760 33.333 1.73e-54 187
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05967 K14811 - gmx:100305353 808.52