Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05963 ATGGACAAGATTTTAGGTGAGTTATTGGAGGAGCATCGCAGCCATATTAAGAATTTGAGTGAGAATGATGATGTTGATCCGGATCATCAAGACTTCATGGATGTGATGCTTTCGTTGCTTGATGGAACAAAAATTGAAGAATTTGATTCCGATACTACAATCAAAGGCACAACATTGGCACTTATCGCGGGAGGAGTTGAAACAACTAGTGGCACTCTTACATGGGCAATAAGTTTATTACTAAAAAATCCTCATGTGATGAAAAAAGCAAAGGAAGAACTTAACATTCATGTTGAAAAAGAAAGATGTGTAGAAGTATCTGACATAAAAAACTTGATATACCTTCAAAGTATAGTAAAAGAAACACTAAGATTATATCCACCAGTCCCACTCTCAGTGCCACGCGAATTCTCAGAAGATTGCAATTTAGATGGTTATGTTATCGAAAAAGGAACTCGACTTATCTTAAATCTTTGGAAGATTCACACTGATCCTAAGATTTGGTTAGATCCATTAGAGTTCAAACCAGAACGATTTCTTACCACTAATAAGGATATTGATGTTAAGGGTCATAGTTTTGAATTGTTACCATTTGGAAGTGGTAGAAGAATTTGTCCTGGAATATCTTTGGGCCTTCAAATGGTGCATATGGCTTTAGCTAGTTTTTTGCATTCGTTTGAAATCTTAAATCCATCATCTAAACCTATTGATATGACTGAAGGTTTTGGAGTAACCTACATCAAAGCAACTCCTCTAGAGATTCTTATTAAGCCATGCTTATCTTCTAGTTATTATGAAAACATGTAA 807 0.3519 MDKILGELLEEHRSHIKNLSENDDVDPDHQDFMDVMLSLLDGTKIEEFDSDTTIKGTTLALIAGGVETTSGTLTWAISLLLKNPHVMKKAKEELNIHVEKERCVEVSDIKNLIYLQSIVKETLRLYPPVPLSVPREFSEDCNLDGYVIEKGTRLILNLWKIHTDPKIWLDPLEFKPERFLTTNKDIDVKGHSFELLPFGSGRRICPGISLGLQMVHMALASFLHSFEILNPSSKPIDMTEGFGVTYIKATPLEILIKPCLSSSYYENM 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05963 268 ProSitePatterns Cytochrome P450 cysteine heme-iron ligand signature. 198 207 IPR017972 GO:0005506|GO:0016705
Vifa1g05963 268 PANTHER CYTOCHROME P450 82C3-RELATED 1 265 - -
Vifa1g05963 268 PRINTS P450 superfamily signature 196 205 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS P450 superfamily signature 64 81 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS P450 superfamily signature 117 128 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS E-class P450 group I signature 53 70 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS E-class P450 group I signature 157 181 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS E-class P450 group I signature 73 99 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS E-class P450 group I signature 116 134 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS E-class P450 group I signature 205 228 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 PRINTS E-class P450 group I signature 195 205 IPR002401 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 SUPERFAMILY Cytochrome P450 4 258 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 FunFam Uncharacterized protein 1 261 - -
Vifa1g05963 268 Gene3D Cytochrome P450 1 257 IPR036396 GO:0004497|GO:0005506|GO:0016705|GO:0020037
Vifa1g05963 268 Pfam Cytochrome P450 3 243 IPR001128 GO:0004497|GO:0005506|GO:0016705|GO:0020037
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05963 Vifa-Chr1 932940176 932941246 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05963 1 265 Cytochrome P450 AT4G31950 53.333 3.54e-94 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05963 - - gmx:100805047 358.221