Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05944 ATGGGTGGTGATGATCAGAAAAATGTTTTCATTGTTCAAAAGAAGAAAACGAAAAATGTTTCTTTTAGGTCAATTTTCATGCATGCTGATATTCTAGATTGGTTCTTCATGGTTTTTGGTTTTTTGGGATCAATTTGTGATGGCATAATGATACCTTTGGTGTTGTATATCACAAGCAAAATTATGAACTCTATTGGTAGTTTTTCTGGCTCAACAGGCAACAACTTTGTTCATAGCATCAATAAGAATGCAGTTGTTGTGTTATATGTGGCTTGTGCCTCTTTTGTTGCTTGCTTCTTAGAGGGTTATTGTTGGACAAGAACAGGTGAAAGACAAGCTGCAAGAATGAGAGCTAGGTACCTAAAAGCAGTTCTAAGACAAGAAGTAGCATACTTTGATTTGCATGTTACAAGTACATCAGAAATCATCACTAGTGTCTCTACAGACAGTCTAGTAATTCAAGATGTTCTAAGTGATAAGGTTCCGGATTTTTTGAAGAATGTGTCTCAGTTCATTGGGAGCTATGTAGTGGCATTTATATCATTATGGAGATTGGCCCTTGTTGGATTCCCTTTTATAGTTCTACTTGTGGTTCCTGGTTTCATGTATAAGAGGACTTTGATGGAGTTGGCTAGAAAAATCAGACAAGAGTATAATCAAGCTGGCACAATAGTAGAACAAACAATATCTTCTATCAGAACTGTTTATTCTTTTGTAGGAGAAACCAGAACCATAGCTGCTTTCTCTGATGCTTTAGAAGGATCTGTGAAGTTGGGATTGAAACAAGGTTTAGCTAAAGGCTTAGTCATTGGAATAAGTGGTGTTAATTATGCTGTATGGTCTTTAATTGCCTATTATGGTAGCATATTGGTCATGTATCATGGTGCTAAAGGTGGTGATGTATTTGCAGTTGGATCGTTAATCGGAATCGGAGGATTGGCTTTAGGATCTAGTTTAGCAAATGTGAGATACTTCACAGATGCAAGTGCTGCAGGAGAAAGAATAATGGAAATGATAAAAAGAGTTCCAAAGATTGATTCAGAAAACATGAATGGTGAAGTTCTAGAGAAAGTGTTGGGGGAAGTTGAATTCAACCATGTTGAATTTGTGTATCCAGCAAGGCCAGAAAGTGTGATCTTAAATAATTTTTGTCTAAAGATTCCATCCGGTAAAACAGTTGCATTAGTAGGAGGAAGTGGCTCGGGAAAATCAACTGTAATATCACTTTTGCAAAGGTTTTATGATCCAATTGGTGGAGAGATTCTTTTTGATGGAGTTGCTATTCATAAGTTGCAACTCAAATGGCTTAGATCTCAAATGGGATTGGTGAGTCAAGAGCCTGCTTTGTTTGCAACAAGTATTAAAGAGAATATACTTTTTGGAAGAGAGGATGCTACATATGAAGAGATTGTTGATGCTGCTAAAGCTTCTAATGCTCATAATTTTATTTCTATGTTGCCACAAGGATATGATACTCAGGTTGGGGAGAGGGGAATACAAATGTCAGGAGGACAAAAGCAAAGGATTGCCATTGCAAGAGCCATAATAAAAATGCCAAGAATTTTATTGTTAGATGAAGCAACAAGTGCACTCGATTCTGAATCCGAACGAATCGTCCAAGAAGCTCTAGACAAAGCCGTGGTTGGACGCACCACCATCATCATCGCTCACCGCTTATCGACTATCCAAAATGCAGACATCATTGCATTCGTTCAAAATGGTAAGATCGTGGAAACGGGATCTCACAAAAGCCTCATTCAAAATGATAGTTCTCTCTACACTTCCCTCGTTCTTCTCCAACAAACCAAGAATGACCAAAGCGACGATACTCCGTCTATCATTAATATAGATCACATGCAAAACACGAGTAGTTATAGACTCGCGGCTCATTCTAGCTCTTTCGACTCAATGACACGTAGCAGTGGTGATATTGCTAATGATAAAAATGTTGTTGGAGATATCGTTAATGATGTTGAGAGGGAGAAGAAGGAGAAGGTAAAGGTTCCTTCGTTTCGAAGATTGTTGGCAATGAACTTTCCAGAGTGGAGGCAAGTGTGTTTGGGGTGTTTGAACGCGATTTTATTCAGTGCAGTTCAACCTGTGTATGCATTTGCAACAGGGTCAGTTGCATCAGTTTATTTTCTGGAGGACCATGATGAGATCAAGAAACAAATTAGGATCTATGCATTTTGTTTTCTAGGGTTGGCTTTGTCCACAATGGTTTTTAATGTACTTCAACATTATAGCTTTGCTTACATGGGAGAGTACTTGACTAAGAGGGTTAGAGAAAGAATGTTTTCAAAGATACTCACTTTTGAAGTTGGTTGGTTTGATGAGGATCAAAATTCTACAGGTGCTGTTTGCTCTAGACTTGCCAAAGAAGCCAATGTGGTAAGATCGTTGGTGGGGGATAGATTGTCAGTAATGATACAAACTATATCAGCAGTGGCAGTAACATTCACAATGGGCCTAATCATTACTTGGAGACTATCCATTGTTATGATAGTAGTTCAGCCAATTAGCATATTTTGTTTCTACATAAGGTGTGTCCTTCTTAACAAGATGTCAAGCAAAGCCATTAAGGCCCAAGATGAAAGTAGCAAAATTGCTGCTGAAGCTGTTTCAAATCTAAGAACCATCACATCTTTTTCATCACAAAATAGAATCCTTAAAATGCTTGAAAAATCCCAACAAGGGCCAAGTCATGAAAATATTAGACAATCATGGTTTGCAGGTATTGGGCTTGCATGTTCACAAAGTCTCATTTTTTGCACTAGAGCCTTAAACTTTTGGTATGGAGGAAAACTTGTGTCACAAGGATATATAACAAAGAATGCATTTTTTGAGACTACTATGATTTGGATAAGCACTGGAAAAGTTATTGCTAATGCTGCTAGTAGCATGACTAATGATTTTGCTAAAGGTTCCAGTGCCGTTGGATCGGTTTTCGCTGTCCTCGATAGGTATACAAAAATTGAGCCAGATGATTTAGAAGGTTACAAGGTTGAAAAATTAATAGGGAAGATTGAACTTCATGATGTGCATTTTGCATATCCGGCTAGACCTAATTTGATGATCTTTCAAGGGTTCTCTATTGAAATTGACGCCGGAAAATCAACAGCTTTGGTCGGGGAAAGTGGTTCAGGAAAATCAACAATCATAGGACTAATTGAGAGATTCTATGATCCTTTTAAAGGAACGGTGACAGTAGATGGTAGAGACATAAAGTCTTATAATCTAAGATCATTAAGGAAACACATTGCACTTGTGAATCAAGAACCAACATTGTTTGGTGGTACCATAAGGGACAATATAGCATATGGAGCATATGATGATAAAGTTGATGAGAGTGAGATCATTGAAGCTGCAAAGGCTGCAAATGCTCATGATTTCATATCAAGCTTAAAAGATGGTTATGAAACATGGTGTGGTAATAAAGGAGTTCAACTAAGTGGTGGTCAAAAACAAAGAATTGCAATAGCTAGAGCTATATTGAAGAATCCAAGAGTTTTGCTTTTGGATGAAGCAACAAGTGCACTTGACAGCCAATCAGAGAAACTAGTGCAAGATGCTTTAGAAAGGGTTATGGTTGGAAGGACAAGTGTGGTTGTGGCTCATAGGTTGAGTACTATACAAAACTGTGATTTGATTGCTGTTTTGGATAAGGGAAGTGTTGTTGAGAAAGGAACACATTCATCTTTGTTGGCTAAGGGACCAAAAATCAACTAA 3729 0.3784 MGGDDQKNVFIVQKKKTKNVSFRSIFMHADILDWFFMVFGFLGSICDGIMIPLVLYITSKIMNSIGSFSGSTGNNFVHSINKNAVVVLYVACASFVACFLEGYCWTRTGERQAARMRARYLKAVLRQEVAYFDLHVTSTSEIITSVSTDSLVIQDVLSDKVPDFLKNVSQFIGSYVVAFISLWRLALVGFPFIVLLVVPGFMYKRTLMELARKIRQEYNQAGTIVEQTISSIRTVYSFVGETRTIAAFSDALEGSVKLGLKQGLAKGLVIGISGVNYAVWSLIAYYGSILVMYHGAKGGDVFAVGSLIGIGGLALGSSLANVRYFTDASAAGERIMEMIKRVPKIDSENMNGEVLEKVLGEVEFNHVEFVYPARPESVILNNFCLKIPSGKTVALVGGSGSGKSTVISLLQRFYDPIGGEILFDGVAIHKLQLKWLRSQMGLVSQEPALFATSIKENILFGREDATYEEIVDAAKASNAHNFISMLPQGYDTQVGERGIQMSGGQKQRIAIARAIIKMPRILLLDEATSALDSESERIVQEALDKAVVGRTTIIIAHRLSTIQNADIIAFVQNGKIVETGSHKSLIQNDSSLYTSLVLLQQTKNDQSDDTPSIINIDHMQNTSSYRLAAHSSSFDSMTRSSGDIANDKNVVGDIVNDVEREKKEKVKVPSFRRLLAMNFPEWRQVCLGCLNAILFSAVQPVYAFATGSVASVYFLEDHDEIKKQIRIYAFCFLGLALSTMVFNVLQHYSFAYMGEYLTKRVRERMFSKILTFEVGWFDEDQNSTGAVCSRLAKEANVVRSLVGDRLSVMIQTISAVAVTFTMGLIITWRLSIVMIVVQPISIFCFYIRCVLLNKMSSKAIKAQDESSKIAAEAVSNLRTITSFSSQNRILKMLEKSQQGPSHENIRQSWFAGIGLACSQSLIFCTRALNFWYGGKLVSQGYITKNAFFETTMIWISTGKVIANAASSMTNDFAKGSSAVGSVFAVLDRYTKIEPDDLEGYKVEKLIGKIELHDVHFAYPARPNLMIFQGFSIEIDAGKSTALVGESGSGKSTIIGLIERFYDPFKGTVTVDGRDIKSYNLRSLRKHIALVNQEPTLFGGTIRDNIAYGAYDDKVDESEIIEAAKAANAHDFISSLKDGYETWCGNKGVQLSGGQKQRIAIARAILKNPRVLLLDEATSALDSQSEKLVQDALERVMVGRTSVVVAHRLSTIQNCDLIAVLDKGSVVEKGTHSSLLAKGPKIN 1242
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05944 1242 SMART AAA_5 1036 1230 IPR003593 GO:0016887
Vifa1g05944 1242 SMART AAA_5 389 581 IPR003593 GO:0016887
Vifa1g05944 1242 ProSitePatterns ABC transporters family signature. 501 515 IPR017871 GO:0005524|GO:0016887
Vifa1g05944 1242 Gene3D - 999 1241 IPR027417 -
Vifa1g05944 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1009 1241 IPR003439 GO:0005524
Vifa1g05944 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 38 327 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05944 1242 Pfam ABC transporter 380 529 IPR003439 GO:0005524
Vifa1g05944 1242 SUPERFAMILY ABC transporter transmembrane region 672 993 IPR036640 GO:0005524|GO:0016020
Vifa1g05944 1242 Pfam ABC transporter transmembrane region 38 308 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05944 1242 Pfam ABC transporter transmembrane region 686 947 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05944 1242 Pfam ABC transporter 1028 1178 IPR003439 GO:0005524
Vifa1g05944 1242 CDD ABC_6TM_Pgp_ABCB1_D1_like 37 335 - -
Vifa1g05944 1242 Gene3D - 352 601 IPR027417 -
Vifa1g05944 1242 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 362 598 IPR003439 GO:0005524
Vifa1g05944 1242 FunFam ABC transporter B family member 4 999 1241 - -
Vifa1g05944 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 355 600 IPR027417 -
Vifa1g05944 1242 Gene3D ABC transporter type 1, transmembrane domain 25 611 IPR036640 GO:0005524|GO:0016020
Vifa1g05944 1242 CDD ABC_MTABC3_MDL1_MDL2 1009 1238 - -
Vifa1g05944 1242 PANTHER ABC TRANSPORTER B FAMILY 13 599 IPR039421 -
Vifa1g05944 1242 CDD ABC_MTABC3_MDL1_MDL2 362 600 - -
Vifa1g05944 1242 FunFam ABC transporter B family member 4 352 607 - -
Vifa1g05944 1242 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1002 1238 IPR027417 -
Vifa1g05944 1242 SUPERFAMILY ABC transporter transmembrane region 33 343 IPR036640 GO:0005524|GO:0016020
Vifa1g05944 1242 ProSitePatterns ABC transporters family signature. 1150 1164 IPR017871 GO:0005524|GO:0016887
Vifa1g05944 1242 FunFam ABC transporter B family member 1 24 359 - -
Vifa1g05944 1242 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 692 943 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05944 1242 CDD ABC_6TM_Pgp_ABCB1_D2_like 675 992 - -
Vifa1g05944 1242 Gene3D ABC transporter type 1, transmembrane domain 665 968 IPR036640 GO:0005524|GO:0016020
Vifa1g05944 1242 FunFam Putative ABC transporter B family member 8 652 997 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05944 Vifa-Chr1 931365035 931375121 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05944 13 1239 Calmodulin-binding Proteins AT2G36910 43.650 0.0 1031