Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05939 ATGAGTGCAGGAACAACTGGATATAAACGCCTGAGAAAGCCAGAGGAGACGAAAATGAGAATAAGAAAACATGATTCATATGAAACTTCTAATCCCATGACTGCATTGCTAGTAGATGGTGTGGCTGAAAATAGACATTTGGAGCATCAAATACTTGAATCAATAGGCATTCGAACAGAACCTGCAAATAGTGCTCAAGAAGCTATGCAACTTTTGTTGACTGGTGTTAATTTTGACGTCATATTTGTTGATTTTGATTTACCAATAATAAGTGGACCTCAGTTTGTGATGGATATGCGTGCACTGGGGATACAAAGCAAAATAGTTGGCATGTTATCAAATTTTAGTGATCATAATTCGCAAATGTTTTTTGAAGCAGGAGTTAATGGTAACACTCAGAAACCTTTGACTCGAGAAATTTTTGAACACGTCATTCAAATCATTCACCTCATATGA 456 0.364 MSAGTTGYKRLRKPEETKMRIRKHDSYETSNPMTALLVDGVAENRHLEHQILESIGIRTEPANSAQEAMQLLLTGVNFDVIFVDFDLPIISGPQFVMDMRALGIQSKIVGMLSNFSDHNSQMFFEAGVNGNTQKPLTREIFEHVIQIIHLI 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05939 151 SUPERFAMILY CheY-like 31 146 IPR011006 -
Vifa1g05939 151 Pfam Response regulator receiver domain 36 139 IPR001789 GO:0000160
Vifa1g05939 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 24 148 - -
Vifa1g05939 151 Gene3D - 10 149 - -
Vifa1g05939 151 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
Vifa1g05939 151 SMART REC_2 33 145 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05939 Vifa-Chr1 930849511 930850054 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05939 36 138 Response Regulator Gene Family AT3G04280 33.333 9.22e-11 54.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g05939 Response_reg 3.5e-10 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05939 - K07647 tpra:123904015 171.014