Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05938 ATGAGTGTAGGAACAACTGGATATAAACGGCTAAGAAAGCCAGAGGAGACGAAAATGGGAATAAGAAAACATGATTCATATGAAACTTCTAATCCCATGACTGCATTGCTAGTAGATGGTGTGGATGAAAATATACATTTGGAGCATCAAATACTTGAATCAATAGGCATTCGAACAGAGCCTGCAAATAGTGCTCAAGAAGCCATGCAACTTTTGTTGACTGGTGTTAATTTTGACATCATATTTGTTGATTTTGATTTGCCAATAATAAGTGGACCTCAGTTTGTGATGGATATGCGTGCATTGGGGATACAAAGCAAAATAGTTGGCATGTTATCAAATTTTAGTGATCATAATTCACAAATGTTTTTTGAAGCAGGAGTTAATGGTAACACTCAAAAACCTTTGACTCGAGAAATTTTTGAACACGTCATTCAAATCATTCACCTCATATGA 456 0.3553 MSVGTTGYKRLRKPEETKMGIRKHDSYETSNPMTALLVDGVDENIHLEHQILESIGIRTEPANSAQEAMQLLLTGVNFDIIFVDFDLPIISGPQFVMDMRALGIQSKIVGMLSNFSDHNSQMFFEAGVNGNTQKPLTREIFEHVIQIIHLI 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05938 151 Gene3D - 21 149 - -
Vifa1g05938 151 SUPERFAMILY CheY-like 31 146 IPR011006 -
Vifa1g05938 151 MobiDBLite consensus disorder prediction 1 22 - -
Vifa1g05938 151 Pfam Response regulator receiver domain 36 139 IPR001789 GO:0000160
Vifa1g05938 151 PANTHER TWO-COMPONENT RESPONSE REGULATOR 26 148 - -
Vifa1g05938 151 SMART REC_2 33 145 IPR001789 GO:0000160
Vifa1g05938 151 ProSiteProfiles Response regulatory domain profile. 34 149 IPR001789 GO:0000160
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05938 Vifa-Chr1 930700813 930701356 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05938 20 138 Response Regulator Gene Family AT3G04280 31.148 5.04e-10 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g05938 Response_reg 2e-09 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05938 - K19691 tpra:123904015 165.236