Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05937 ATGGCTTACGAAGACAACCCGTATCGTGACGAGGACGGCGAACCGTTGATGGACTACGACGACGTACAATCTGACGGCGAAGCTACACCGGAGCCGCAACAGCTTGACGATTTCGAGGAGGAAGATGTTGACGATTGGCGTGGTCGAGAGAGGTCACAAACTCCGGTCCATGACGGCGATTCGTCGAAATCGAAGCCGAGGAAGAGGCTGATTAAAAAGAGCGACACCGGGAAACAGTCAGGAAAGCTCTCGGTTGCACCGGAACTCGAAGATGAGTTGGAGGAGGGCGGTTATCCGGCGATGGATGATGAGGGGGAAGGGAGGAAGAGGAAGAAAGGGAAGGAGAGTGGATCTGGGAAGAAGGAAAAGAGGATGAAAGGGGAAAAGAGGTATGGTGAAAGTAGCGGTGGAAAGAGTGGGTCTAGATTTGGGGGTTCCAAGAAAGGGTTTGCTGGTAAGGCTGGGAATGATCATGATGGTGAAGTTAAGGAGATGTGGGATACAATTGCTGGAGGGGATTCTGAGGATGATCATGAGGGTAACAGGAATATGGATGATGATAACTTTATAGATGACACTGGAGTAGAACCTGCTTTATATGGTTATGATGAACCGCGATCTCCTGGTGATGCTCCTCAGGCCGAGGAAGGTGAGGAGGATGATGAAGTTAAGGATCTTTTCAAAGTGGGTAGGAAAAAGAAGAAGAATGAGAGGAGTCCTGCAGAAATTGCTTTATTAGTTGAGAATGTCATGGCCGAGCTTGAGATTACTGCAGAAGAGGATGCTGAACTTAATAGGCAGTTTAAGCCCGCTATTAATAAACTCAAGAAGTTGCCTCTTCTCCAAGAAGTCCTCTCGAAGAAACAGCTTCAACTTGAGTTTTTAGATCATGGAGTGCTAACTTTATTGAAGAATTGGCTTGAGCCACTTCCTGATGGAAGTCTGCCAAATATTAACATAAGGACAGCAATCTTGAAGATTTTGAATGATTTTCCCATAGACCTAGAGCAGTTTGATAGAAGAGAACAACTGAAGAGGAGTGGTCTTGGAAAGGTGATTATGTTTTTATCAAGGTCCGATGAAGAAATCAATGTAAATAGGAAATTAGCCAAAGATTTGGTTGATAAATGGAGCCGACCTATTTTTAATAAGAGTACTCGGTTTGAAGACATGCGAAATGTTGAGGATGATAGGGCTCCATACAGGAGGCCATCAGTTAAAAAGCCAGCAAATAAAGCCGCAGGGATGGAATCTAGAGATGGCGATCTTGACTTGGATCTTTCACAGCCTAGGGCTGGACAGTCATCTTCCAGGCAACATGCATCAAGGCCAGAAGCGACACCTTTGGATTTTGTGATCCGCCCCCAATCTAAAATTGATCCTGATGAAATTAGAGCCCGTGCAAAACAAGGTTCACAAGACCAGCATCGAATGAAGATGAATAAGAAATTGCAGCAATTGAGGGCTCCAAAAAAGAAGCAGCTTCAGGCTACAAAACTGAGTGTCGAAGGTCGTGGTATGGTCAAGTACTTTTAG 1536 0.4538 MAYEDNPYRDEDGEPLMDYDDVQSDGEATPEPQQLDDFEEEDVDDWRGRERSQTPVHDGDSSKSKPRKRLIKKSDTGKQSGKLSVAPELEDELEEGGYPAMDDEGEGRKRKKGKESGSGKKEKRMKGEKRYGESSGGKSGSRFGGSKKGFAGKAGNDHDGEVKEMWDTIAGGDSEDDHEGNRNMDDDNFIDDTGVEPALYGYDEPRSPGDAPQAEEGEEDDEVKDLFKVGRKKKKNERSPAEIALLVENVMAELEITAEEDAELNRQFKPAINKLKKLPLLQEVLSKKQLQLEFLDHGVLTLLKNWLEPLPDGSLPNINIRTAILKILNDFPIDLEQFDRREQLKRSGLGKVIMFLSRSDEEINVNRKLAKDLVDKWSRPIFNKSTRFEDMRNVEDDRAPYRRPSVKKPANKAAGMESRDGDLDLDLSQPRAGQSSSRQHASRPEATPLDFVIRPQSKIDPDEIRARAKQGSQDQHRMKMNKKLQQLRAPKKKQLQATKLSVEGRGMVKYF 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05937 511 Pfam TFIIS helical bundle-like domain 327 381 IPR017923 -
Vifa1g05937 511 MobiDBLite consensus disorder prediction 429 443 - -
Vifa1g05937 511 MobiDBLite consensus disorder prediction 152 189 - -
Vifa1g05937 511 PANTHER PROTEIN IWS1 HOMOLOG 1 1 510 IPR044204 GO:0009742|GO:0032784
Vifa1g05937 511 MobiDBLite consensus disorder prediction 101 135 - -
Vifa1g05937 511 MobiDBLite consensus disorder prediction 44 65 - -
Vifa1g05937 511 MobiDBLite consensus disorder prediction 456 481 - -
Vifa1g05937 511 Gene3D Conserved domain common to transcription factors TFIIS, elongin A, CRSP70 240 387 IPR035441 -
Vifa1g05937 511 MobiDBLite consensus disorder prediction 395 497 - -
Vifa1g05937 511 MobiDBLite consensus disorder prediction 1 222 - -
Vifa1g05937 511 ProSiteProfiles TFIIS N-terminal domain profile. 301 384 IPR017923 -
Vifa1g05937 511 Coils Coil 247 267 - -
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR IWS1 Vifa1g05937 Med26 6.6e-13 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05937 K17498 - gmx:100801805 800.045