Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05930 ATGTCTATCATGCCTATCACTGCGACTGGTACTCCTGGAGCTGTTACTGGCCCCACAACAAACCTAAATATAGGAATGGATTATTGGAGCACGCCAGCCCCATCCAACATTCCTGCTCTCCGTGGAAAAGTTCCGGCTACTACAGTTGCGGGAGGGATAGTTACTGGTGGATCACGGGATAGTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAATAGGGAATCTGCTCGGAGATCCAGGTTGCGCAAACAGGCTGAGTGCGACGAGTTAGCTCAGCGTGCTGATCTCTCAAGCAGAGACTTGAGGAACAACCGGGGTAACGATCAAAACGTTGGTAACGACACTCAACAGAGTGGACAGACAGAGGATGTGCAAGCTGGTCATTAG 420 0.5 MSIMPITATGTPGAVTGPTTNLNIGMDYWSTPAPSNIPALRGKVPATTVAGGIVTGGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADLSSRDLRNNRGNDQNVGNDTQQSGQTEDVQAGH 139
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05930 139 PANTHER G-BOX-BINDING FACTOR 3-RELATED 3 107 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vifa1g05930 139 MobiDBLite consensus disorder prediction 114 139 - -
Vifa1g05930 139 Gene3D - 74 122 - -
Vifa1g05930 139 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 73 106 IPR004827 GO:0003700|GO:0006355
Vifa1g05930 139 SUPERFAMILY Leucine zipper domain 74 112 IPR046347 GO:0003700|GO:0006355
Vifa1g05930 139 MobiDBLite consensus disorder prediction 88 113 - -
Vifa1g05930 139 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 78 93 IPR004827 GO:0003700|GO:0006355
Vifa1g05930 139 CDD bZIP_plant_GBF1 76 106 IPR045314 GO:0003700|GO:0006355
Vifa1g05930 139 MobiDBLite consensus disorder prediction 72 139 - -
Vifa1g05930 139 SMART brlzneu 71 131 IPR004827 GO:0003700|GO:0006355
Vifa1g05930 139 Pfam bZIP transcription factor 71 106 IPR004827 GO:0003700|GO:0006355
Vifa1g05930 139 Pfam Disordered region downstream of MFMR 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05930 Vifa-Chr1 929704403 929705307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05930 1 116 bZIP Transcription Factor Family AT2G35530 63.793 1.09e-43 146
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g05930 bZIP_1 3.4e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05930 K09060 - gmx:778122 190.66