Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05929 ATGTCTATCATGCCTATCACTGCGACTGGTACTCCTGGAGCTGTTACTGGCCCCACAACAAACCTAAATATAGGAATGGATTATTGGAGCACGCCAGCCCCATCCAACATTCCTGCTCTCCGTGGAAAAGTTCCGGCTACTACAGTTGCGGGAGGGATAGTTACTGGTGGATCACGGGATAGTGTTCAGTCACAACTTTGGCTACAGGATGAAAGAGAGCTTAAAAGGCAAAGGCGGAAGCAGTCTAATAGGGAATCTGCTCGGAGATCCAGGTTGCGCAAACAGGCTGAGTGCGACGAGTTAGCTCAGCGTGCTGATCTCTCAAGAGACTTGAGGAACAACCGGGGTAACGATCAAAACGTTGGTAACGACACTCAACAGAGTGGACAGACAGAGGATGTGCAAGCTGGTCATTAG 417 0.4988 MSIMPITATGTPGAVTGPTTNLNIGMDYWSTPAPSNIPALRGKVPATTVAGGIVTGGSRDSVQSQLWLQDERELKRQRRKQSNRESARRSRLRKQAECDELAQRADLSRDLRNNRGNDQNVGNDTQQSGQTEDVQAGH 138
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05929 138 Gene3D - 74 121 - -
Vifa1g05929 138 MobiDBLite consensus disorder prediction 72 138 - -
Vifa1g05929 138 Pfam bZIP transcription factor 71 106 IPR004827 GO:0003700|GO:0006355
Vifa1g05929 138 PANTHER G-BOX-BINDING FACTOR 3-RELATED 3 106 IPR044827 GO:0003700|GO:0006355|GO:0043565
Vifa1g05929 138 SUPERFAMILY Leucine zipper domain 74 109 IPR046347 GO:0003700|GO:0006355
Vifa1g05929 138 ProSiteProfiles Basic-leucine zipper (bZIP) domain profile. 73 106 IPR004827 GO:0003700|GO:0006355
Vifa1g05929 138 SMART brlzneu 71 136 IPR004827 GO:0003700|GO:0006355
Vifa1g05929 138 MobiDBLite consensus disorder prediction 88 113 - -
Vifa1g05929 138 ProSitePatterns Basic-leucine zipper (bZIP) domain signature. 78 93 IPR004827 GO:0003700|GO:0006355
Vifa1g05929 138 CDD bZIP_plant_GBF1 76 106 IPR045314 GO:0003700|GO:0006355
Vifa1g05929 138 MobiDBLite consensus disorder prediction 114 138 - -
Vifa1g05929 138 Pfam Disordered region downstream of MFMR 1 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05929 Vifa-Chr1 929704403 929705307 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05929 1 107 bZIP Transcription Factor Family AT2G35530 67.290 1.67e-43 145
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bZIP Vifa1g05929 bZIP_1 4.6e-12 CL0018
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05929 K09060 - gmx:778122 190.274
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05929 1 929704403 929705307 Vifa1g05929 1 929704403 929705307 ECH