Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05926 ATGGCACCAACACCGACAAACCCAGAAGAACACGAACCGGCGCGACTCGAATCTCTCGCAGAAACCCAAAACTCCAAAACCGCCCTTAAATACCCCAAACGACCTCCACAGTTACACGGAATCTCAGAGTTAGTTAACTCTCTCAACATCCTATCTGCTCCCGATTTCTACGCCGTTCTCGACGTAGAACCCACTGCCGATTCCAGAACCATTTGGGATCAGTACAACAAACTCGCTTCTCTTTTTCATCCCGACAATAACCGGGCTTCGTCTCGAGAAGCTTTCAGACTTGTCACCGACGCGTTTGGTGTTCTCTCTGATAAAACACTCAGACAAAACTACGACGGTAAGGTTGATCTTGAGATTCGAGAAAATATGAGAACCTTTTGGACTGCGTGTTGTACTTGTAGGGTTTTGCATCAGTTTGAGAGAAGGTATTTGGGTCATAAGCTTGTGTGTCCTGGTTGTAATAGGAGTTTTAAGGCTGTTGAAGCTGTTGAGAATGATGGGTCTGGGGAAGAAGAGGATAACACTTTGGGGGAGTTTATGTTGAAGAGTATCAAGAGAAAGAAATCTGAGAAAATGGGTTGTGAGAAAGGTGAGAGCTTTAAGAATAATGGGAAAATGGGTTCTGAAAAAGGTGAGAGCTTTAAGGGTAATGGTGAAGTGAGTGGTGAAAAAGGTGTGAGTTTTAAAAGTAATGATGAAGTGGGTGTTACTGGTAGAATGAGAAAGAGAACACGTTTGGTTGAGGAGGTTTTGGAGAGTTCTGAATCCAAGAAGGTTGATGGGATTGAAGAGGAAACGATGACATTGGCTGAATTTCAATCAAAAGTGAAGACTAAGAGAAAGGTTCAGAAAGAGAAAATGAAGGGATTGGAAATTAAGAGTTTTCAAGTCAAGGAGAAGAAGAATGATGATTCTGTGGAGAGAAAGGAGTTGAGACTTGAGAAGCATAAGGATTTTATTGGAGAAGAGTTAGAAGCTATGGCGGTTGCGGATTCGGATTTTTATGATTTTGATAAAGATAGAGTGGGGAGGAGTTTTAAGAAAGGTCAAGTTTGGGCTGTGTATGATGGCGATCATGATGGAATGCCGAGGCAGTATGCTTTGATTGATGAAACTGTTTCGGCGAATCCTTTTCAAGTTAGGATAAGTTGGTTGGATTTACAGAACGACGGGGATGAAAAGATTGTTAGCAGGGAGAAATTAGGGTTTCATATACCTTGTGGGAGGTTTAGAGTTGCTAAGAAGACTATAATTAATTCAGTAAATGTTTTTTCTCATGTTGTGGATTGTGATCAAGCAGCGCGCGAGGTTTACAAGATTTATCCTAAGAAGGGTTCGGTTTGGGCGCTTTATAGTGAGGCGAGTCTTGATGGAGGCGACGGCATAAGATGCTATGAAATTGTTGTGCTTTTGACAAGTTATAGTGAGATGAATGGTATGAGCATGGCATTTCTTGAGAAGGTTGATGGTTACAAGACACTGTTTAAAAGACAGGAGAGTGGGAGTCATGCTGTTAGATTTCTAGGGAAGGATGAATTTTGGTTACTTTCTCATCAGATTCCTGCACAGAAATTTCCCGGCGACGAAGCTCCAGAATTGTTGAAAGACTGTTGGGAGCTTGATCCGGCTTCACTTCCTTCGGATTTACTGACTATTGGTGGAATAGATAATTGA 1683 0.4201 MAPTPTNPEEHEPARLESLAETQNSKTALKYPKRPPQLHGISELVNSLNILSAPDFYAVLDVEPTADSRTIWDQYNKLASLFHPDNNRASSREAFRLVTDAFGVLSDKTLRQNYDGKVDLEIRENMRTFWTACCTCRVLHQFERRYLGHKLVCPGCNRSFKAVEAVENDGSGEEEDNTLGEFMLKSIKRKKSEKMGCEKGESFKNNGKMGSEKGESFKGNGEVSGEKGVSFKSNDEVGVTGRMRKRTRLVEEVLESSESKKVDGIEEETMTLAEFQSKVKTKRKVQKEKMKGLEIKSFQVKEKKNDDSVERKELRLEKHKDFIGEELEAMAVADSDFYDFDKDRVGRSFKKGQVWAVYDGDHDGMPRQYALIDETVSANPFQVRISWLDLQNDGDEKIVSREKLGFHIPCGRFRVAKKTIINSVNVFSHVVDCDQAAREVYKIYPKKGSVWALYSEASLDGGDGIRCYEIVVLLTSYSEMNGMSMAFLEKVDGYKTLFKRQESGSHAVRFLGKDEFWLLSHQIPAQKFPGDEAPELLKDCWELDPASLPSDLLTIGGIDN 560
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05926 560 Pfam DnaJ domain 55 115 IPR001623 -
Vifa1g05926 560 Pfam Domain of unknown function (DUF3444) 329 531 IPR024593 -
Vifa1g05926 560 ProSiteProfiles dnaJ domain profile. 55 118 IPR001623 -
Vifa1g05926 560 CDD DnaJ 55 107 IPR001623 -
Vifa1g05926 560 PANTHER BNAC03G44070D PROTEIN 15 549 - -
Vifa1g05926 560 MobiDBLite consensus disorder prediction 198 229 - -
Vifa1g05926 560 SUPERFAMILY Chaperone J-domain 48 116 IPR036869 -
Vifa1g05926 560 Gene3D DnaJ domain 45 130 IPR036869 -
Vifa1g05926 560 SMART dnaj_3 54 110 IPR001623 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05926 Vifa-Chr1 929287713 929289395 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05926 6 163 SUVH1 or 3-interacting DNAJ domain-containing protein superfamily AT2G01710 30.457 4.92e-19 87.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05926 - - tpra:123909844 808.135