Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05923 ATGAAGAGGGCTAGAGATGATATTTACTCTGCCTCTGCTTCTCAATTCAAACGTCCTTATAGTTCTTCACGCGGGGATTCCTATGGCCAAGGCCAAGGTCAAGTCCCCGGAAGTGGAGGTGGTGGTGGACTTGTTATCGGCGGTGGAGGAGCGACTACTTCTCAGAAATTGACTACCAATGATGCTTTATCGTATTTGAAGGAAGTGAAAGACATGTTCCAGGATCAAAAAGAAAAATATGACACCTTCCTTGAGGTCATGAAAGATTTCAAGGCCCAAAAGACCGACACTTCTGGTGTCATAGCAAGGGTCAAGGAACTATTCAAAGGTCACAACAATTTGATTTTTGGATTTAACACTTTCCTGCCAAAGGGATTTGAGATAACACTTGATGAGGAGGAAGCTCCTCCGAAGAAAACAGTTGAATTTGAAGAAGCTATTAGTTTTGTGAACAAGATAAAGAAACGATTCCAAAACGACGAGCATGTTTACAAATCATTCTTGGACATTTTGAATATGTATCGCAAAGAACACAAGGACATTGGTGATGTTTACAGTGAGGTTGCCATCCTTTTTAAGGAGCATAGAGATTTGCTCGAGGAGTTCACTAGATTCTTACCAGATAATTCTGCAGCACCTTCCACACAGCATGCTCCGTTTGGTCGAAATTCATTGCAGCGCTTCAATGAGCGGGGTTCTATGGCACCCATGATGCGGCAAATGCAAGTAGAAAAGCAACGATATCGGCGAGACCGGTTTCCTTCCCATGATCGTGATCTGAGTGTTGAACGTCCTGATCTGGATGACGACAAAACAATGATGAACTTGCACAAGGAGCAAAGGAAACGCGAGATTAGGGATAGAAGGATCCGCGATCATGATGAAAGGGAACATGATCTTGATAACTCACAACGCTTTGCTGACAAAAAAAAATCTGTTAAGAAGGCCGAAGCTTATGGATTGTCTTCTGACTATGCTTCTCATGATGATAAAGATGCATTAAAGATCATGTATAGTCAAGCATTCAGTTTCTGTGAGAAAGTGAAGGAGAAGTTGAGCAGCGCTGAGGACTACCAAACATTCTTGAAATGCCTTCATATTTTTAGCAATGGAATAATAAAAAGGAATGATTTGCAAAATTTGGTGAAGGATTTACTTGGAAAGTATTCTGATCTCATGAGCGAATTCAATGATTTCTTGGAGCGTTGTGAAAATATTGATGGGTTCCTTGCTGGTGTCATGAGTAAAAAGCCACTCGCTACTGATGGTCATTTATCAAGATCATCCAAGTTGGAGGACAGAGAACACAAGCGTGAGATGGATGGAGCTAAAGAGAAGGAAAGATACAAGGAGAAATACATGGGAAAATCCATTCAAGAGCTTGACCTTAGTGATTGCAAACGTTGTTCTCCCAGCTACCGACTTTTACCGGCTGATTATCCGATTCCTATGGCTAGTCAGCGATCTGAGCTTGGTGCGCAAGTATTGAATGATCACTGGGTATCTGTGACTTCAGGAAGTGAGGATTACTCTTTCAAACATATGCGCAGGAATCAATATGAAGAAAGCTTGTTCAGATGTGAAGATGACAGGTTTGAGCTGGACATGTTATTAGAGTCAGTGAGTTCCGCTGCTAAACGAGCTGATGAGTTGTACACCAACATTACTGAAAATAAGATCAGCGTGGAGAGTCTGAGTCGTATTGAAGATCACTTTACTGTTCTGAATTTAAGGTGCATTGAACGCCTATATGGTGACCATGGTCTTGATGTCCTAGACATACTACGTAAGAACCCAACTCATGCTCTGCCTGTAATATTGACTCGATTGAAGCAGAAACAAGAGGAGTGGAATAGGTGCCGTACCGATTTCAATAAAGTTTGGGCTGACATTTATTCTAAAAATCACTACAAATCACTTGATCACCGTAGCTTCTATTTCAAGCAACAAGATTCAAAGAACTTGAGCACCAAATCTTTGGTGGCTGAGATTAAAGAAATTAAAGAGAAGCAACAGAAAGAAGATGACATTGTTCAGTCTATTGCTGCTGGGGCTAAACATTCTCTCCTTCCACATTTGGAATTCGACTGTTCTGATACCGAAATTCATGAGGACTTGTATAAACTTGTTCGTTATTCATGTGAGGAGGTATTCTCAAGTAAAGAGTTATACAACAAAATTATGAGGCTCTGGAGTTCCTTCTTGGAACCGATGCTTGGTGTTACTTCCCAATCACATGAGACCGAAAGGGTAGAGGACAGGAAAGTAGGACATAACGCCCGAAGTTCTGTTGCACCAAGTGTAGGAGGTGATGGAAGTCCTCACAGAGAATCAATTTCAAGGATACCAAAATCTGAAAAGAATGAAGGCGATGGTAGAGTAACTGAAGTGAAAAATGTTCACCGAACTAGTTTAGCTGCCAATGATAAAGAAAATGGTTCTGTTGGTAGCGAACTTGTTAGTAGAGATGATCTTTTAATGGATAAAGGGCAGAAAAGTGTTGACTGCAATGATAATAAAGCCCCTGGATTTGGTAAACAGTTTTTCTCTGATGAACCGGGAGCCAGAAACATTGCATCTGTTGCAATTAGAGGCGAAAGCAGTGTGAGCAGAACCAACTTAGATATGTCTCCAGGCCGAATACTTACTCCATCCCGACCGACTGATGCTGATGTCTCTGGAGCAAGAGCCAAGTCTCCGATTGCTAATCTACCTTTGGTAGAGGGATGTGATGCTATCGCTCGATCTGCAGTACCAGTGGCCAATGGCATGTTAGTTGAGAACAGTAAAGTTAAAAGCTATGAAGAATCTTCTATGCCTTGCAAAATTGAAAAGGAAGAGGGTGAATTATCCCCAAATGCTGACTCTGAGGAGGATAACTTTGTTGCCTATGATTCAAACCTGCAGTCGATTGCAAAGTCAAAGAACAATGATGATATTAGGAAATATGATGCAGATGCTGGAGGTGATAATGATGCAGATGCTGATGATGAAGATAGCGAAAATGTTTCTGAAGCTGGTGAAGATGTGTCGGGAAGTGAGTCTCCTGATGACGAATGTTTCCGAGGAGATCACGAGGAGGAAGATATCGAACATGATGATGTTGATGGTAAAGCTGAGAGTGAAGGTGAAGCTGAGGGGATGTGTGATGCACAAAATGGTGGAGATGGCTCAACTTTACCATTATCAGAGAGGTTCCTGTCGACTGTGAAACCTCTTACAAAGCATGTATCAGCCGTTTCATTTGTTGAAGATGTGAAGGATTCAAGGGTGTTTTACGGAAATGATGATTTCTTTGCGCTTTTTAGGCTTCATCAAATTCTTTACGAAAGGATCTTATCTGCAAAAGAAAATTCAACTAGTGCTGAAATGAAACGGAAAGTAAAAGATGCTAGTTCTACGGATCCTTATGCAAGATTTATGGACGCATTATATAACTTGCTCGACGGATCTATCGAGAATGCTAAGTTTGAAGATGAATGTCGAGCAATTCTTGGAAACCAGTCTTATGTGTTATTCACATTGGACAAGCTAATATATAAACTTATCAGACAGCTTCAAACTGTTGCAACCGATGAGGAAGACAATAAGCTTCTCCAATTATACGAGTACGAAAAGTCTCGGAAACCTGGCAAATTAAATGATTCGGTATATCATTCAAATGCACATGTCATCCTTCACGACGAAAACATTTATCGTTTTCAATGTTCGTCTAGCCCCTCTCGGCTTTCCATACAACTCATGGACAACATGAATGAAAAGCCCGAGATTGCCGCTGTTTCGGTTGATCCAAATTTTTCTTTTTATCTCCATAATGATTTTCTGTCGGTTCTTCCTAGCAAAAAAGAGCCTCATGGCATTTTACTAGAAAGAAACAAATCGAAATATGGGGACTTAGACGAGCTTTCTGCAATTTGTGCTGTAATGGAAGATGTCAAAGTAGTTAATGGATTGGAATGCAAGATATCTTGCAACTCATCCAAGATTTCTTATGTTCTCGACACACAAGATTTTTTCTTCCGACCAAGAAGGAAAAGACGAACCTCGTCATCATCATCAAGTACATCGTCTTCTCGGTCTCGGAGGGAAAGAGAGGAAAGGTTTCGCAAATTTATGGCATGCGCCATCTAA 4131 0.4101 MKRARDDIYSASASQFKRPYSSSRGDSYGQGQGQVPGSGGGGGLVIGGGGATTSQKLTTNDALSYLKEVKDMFQDQKEKYDTFLEVMKDFKAQKTDTSGVIARVKELFKGHNNLIFGFNTFLPKGFEITLDEEEAPPKKTVEFEEAISFVNKIKKRFQNDEHVYKSFLDILNMYRKEHKDIGDVYSEVAILFKEHRDLLEEFTRFLPDNSAAPSTQHAPFGRNSLQRFNERGSMAPMMRQMQVEKQRYRRDRFPSHDRDLSVERPDLDDDKTMMNLHKEQRKREIRDRRIRDHDEREHDLDNSQRFADKKKSVKKAEAYGLSSDYASHDDKDALKIMYSQAFSFCEKVKEKLSSAEDYQTFLKCLHIFSNGIIKRNDLQNLVKDLLGKYSDLMSEFNDFLERCENIDGFLAGVMSKKPLATDGHLSRSSKLEDREHKREMDGAKEKERYKEKYMGKSIQELDLSDCKRCSPSYRLLPADYPIPMASQRSELGAQVLNDHWVSVTSGSEDYSFKHMRRNQYEESLFRCEDDRFELDMLLESVSSAAKRADELYTNITENKISVESLSRIEDHFTVLNLRCIERLYGDHGLDVLDILRKNPTHALPVILTRLKQKQEEWNRCRTDFNKVWADIYSKNHYKSLDHRSFYFKQQDSKNLSTKSLVAEIKEIKEKQQKEDDIVQSIAAGAKHSLLPHLEFDCSDTEIHEDLYKLVRYSCEEVFSSKELYNKIMRLWSSFLEPMLGVTSQSHETERVEDRKVGHNARSSVAPSVGGDGSPHRESISRIPKSEKNEGDGRVTEVKNVHRTSLAANDKENGSVGSELVSRDDLLMDKGQKSVDCNDNKAPGFGKQFFSDEPGARNIASVAIRGESSVSRTNLDMSPGRILTPSRPTDADVSGARAKSPIANLPLVEGCDAIARSAVPVANGMLVENSKVKSYEESSMPCKIEKEEGELSPNADSEEDNFVAYDSNLQSIAKSKNNDDIRKYDADAGGDNDADADDEDSENVSEAGEDVSGSESPDDECFRGDHEEEDIEHDDVDGKAESEGEAEGMCDAQNGGDGSTLPLSERFLSTVKPLTKHVSAVSFVEDVKDSRVFYGNDDFFALFRLHQILYERILSAKENSTSAEMKRKVKDASSTDPYARFMDALYNLLDGSIENAKFEDECRAILGNQSYVLFTLDKLIYKLIRQLQTVATDEEDNKLLQLYEYEKSRKPGKLNDSVYHSNAHVILHDENIYRFQCSSSPSRLSIQLMDNMNEKPEIAAVSVDPNFSFYLHNDFLSVLPSKKEPHGILLERNKSKYGDLDELSAICAVMEDVKVVNGLECKISCNSSKISYVLDTQDFFFRPRRKRRTSSSSSSTSSSRSRREREERFRKFMACAI 1376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 932 957 - -
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 777 798 - -
Vifa1g05923 1376 Coils Coil 375 395 - -
Vifa1g05923 1376 PANTHER SIN3B-RELATED 55 1234 IPR039774 GO:0003714
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 243 307 - -
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 421 445 - -
Vifa1g05923 1376 FunFam Paired amphipathic helix SIN3-like protein 138 209 - -
Vifa1g05923 1376 SUPERFAMILY PAH2 domain 136 208 IPR036600 GO:0006355
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 990 1005 - -
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 742 817 - -
Vifa1g05923 1376 SUPERFAMILY PAH2 domain 53 124 IPR036600 GO:0006355
Vifa1g05923 1376 ProSiteProfiles PAH domain profile. 139 209 IPR003822 GO:0006355
Vifa1g05923 1376 FunFam Paired amphipathic helix protein Sin3 61 123 - -
Vifa1g05923 1376 Pfam C-terminal domain of Sin3a protein 1092 1339 IPR031693 -
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 1 42 - -
Vifa1g05923 1376 Pfam Paired amphipathic helix repeat 162 206 IPR003822 GO:0006355
Vifa1g05923 1376 Pfam Paired amphipathic helix repeat 78 122 IPR003822 GO:0006355
Vifa1g05923 1376 Pfam Paired amphipathic helix repeat 356 400 IPR003822 GO:0006355
Vifa1g05923 1376 Gene3D Paired amphipathic helix 61 123 IPR036600 GO:0006355
Vifa1g05923 1376 SMART hdac_interact2seq4b 465 565 IPR013194 -
Vifa1g05923 1376 Gene3D Paired amphipathic helix 331 405 IPR036600 GO:0006355
Vifa1g05923 1376 ProSiteProfiles PAH domain profile. 55 125 IPR003822 GO:0006355
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 980 1057 - -
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 229 307 - -
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 1347 1366 - -
Vifa1g05923 1376 SUPERFAMILY PAH2 domain 336 403 IPR036600 GO:0006355
Vifa1g05923 1376 FunFam Paired amphipathic helix protein SIN3 331 405 - -
Vifa1g05923 1376 ProSiteProfiles PAH domain profile. 334 403 IPR003822 GO:0006355
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 14 34 - -
Vifa1g05923 1376 Pfam Sin3 family co-repressor 467 559 IPR013194 -
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 869 894 - -
Vifa1g05923 1376 Gene3D Paired amphipathic helix 138 210 IPR036600 GO:0006355
Vifa1g05923 1376 MobiDBLite consensus disorder prediction 426 445 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05923 Vifa-Chr1 929012181 929020002 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05923 44 158 WRKY Transcription Factor Family AT4G12020 50.435 2.69e-23 106
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Others Vifa1g05923 Sin3a_C 1.4e-56 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05923 K11644 - gmx:100807181 2110.88