Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05918 ATGAAAAGATCAAGGTCAGTGTCTAATAGTGAAAATGACTATGAGGTTAAGATCAATAAAATTCCCGTTCAAGATTTAAAGCACAAGTGCAATATTTGTGGCAAAGCATATGACAATGGAAAAGCATTGGGTGGTCACCGAAGATCTCACTTTCTTAAGAAGAAAGCTAACCATCATTCACAAAAGGTGAAAACTCCTCTCTCAATTAGGGTTAGGAATAATAGAGCTAATTGTTTCATCGATGATAAGTATGATGGAGAAGAAATTGATGAGAAAAAGAAGTTAAGTTGTTATATTTGTGAGAAGGAGTTTTGCACAAACAATGCTTTGTATGGTCATATGAGATCTCATCCCGATAGGGTTTGTAAAGGAGTTAGTCCTCCTTCTTCCAACAATTCTAATTCGTCTACTCGGCAAAACAAAGAAGACGAAGATGATTACTCTTTGCCGAGATGGCAAAAGAGAGATAAAAGAGGTAGAAAATGTATTGGTAGTGCTGAGGCGGCATCTAATCTTTTGCATCTTCGATCAGATAAACACTTTTCTAATTTGTCTAGTGATGAGTCAAAAACTCATAAATTACCGGTTTCTCAATCTTATCATGAAAGAGATTTTCACATGTCTAATGATGATGAAACTCCTAAATTATTGATTCCTCGTCATAAAGGAGATATTTATAAGAGTGAGTCATCTATGAATGAGAATGAGAATCAAAAGAAAAAGCTCGGGATGAAAAATATTAAAATCTTTATAGGATCTTCTTCGAAGATTCGAAACAAAAATAATGAGAATGATGATGATGGTGATGAAACTGACGATAAGAAGTTAAAGAAAAGCAAAAGCTTATCTCAACTTCGTGTGAAAGAAGAAGAAGTTAATCATTATGATGAACAAAAGATATTGGATTTTGATTTGAATGAACCTTATGTTTTGGAGGATTAA 942 0.3355 MKRSRSVSNSENDYEVKINKIPVQDLKHKCNICGKAYDNGKALGGHRRSHFLKKKANHHSQKVKTPLSIRVRNNRANCFIDDKYDGEEIDEKKKLSCYICEKEFCTNNALYGHMRSHPDRVCKGVSPPSSNNSNSSTRQNKEDEDDYSLPRWQKRDKRGRKCIGSAEAASNLLHLRSDKHFSNLSSDESKTHKLPVSQSYHERDFHMSNDDETPKLLIPRHKGDIYKSESSMNENENQKKKLGMKNIKIFIGSSSKIRNKNNENDDDGDETDDKKLKKSKSLSQLRVKEEEVNHYDEQKILDFDLNEPYVLED 313
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05918 313 ProSitePatterns Zinc finger C2H2 type domain signature. 30 50 IPR013087 -
Vifa1g05918 313 Pfam C2H2-type zinc finger 28 50 - -
Vifa1g05918 313 Pfam C2H2-type zinc finger 97 119 - -
Vifa1g05918 313 SUPERFAMILY beta-beta-alpha zinc fingers 28 117 IPR036236 -
Vifa1g05918 313 ProSitePatterns Zinc finger C2H2 type domain signature. 97 117 IPR013087 -
Vifa1g05918 313 SMART c2h2final6 95 117 IPR013087 -
Vifa1g05918 313 SMART c2h2final6 28 50 IPR013087 -
Vifa1g05918 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 28 55 IPR013087 -
Vifa1g05918 313 MobiDBLite consensus disorder prediction 253 290 - -
Vifa1g05918 313 MobiDBLite consensus disorder prediction 121 151 - -
Vifa1g05918 313 MobiDBLite consensus disorder prediction 259 290 - -
Vifa1g05918 313 ProSiteProfiles Zinc finger C2H2 type domain profile. 95 117 IPR013087 -
Vifa1g05918 313 Gene3D Classic Zinc Finger 26 117 - -
Vifa1g05918 313 PANTHER ZINC FINGER PROTEIN ZAT2-RELATED 87 310 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05918 22 131 C2H2 Transcription Factor Family AT2G26940 35.398 1.28e-13 68.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g05918 zf-C2H2_6 0.0032 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05918 - - psat:127096246 363.999