Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vifa1g05918 | ATGAAAAGATCAAGGTCAGTGTCTAATAGTGAAAATGACTATGAGGTTAAGATCAATAAAATTCCCGTTCAAGATTTAAAGCACAAGTGCAATATTTGTGGCAAAGCATATGACAATGGAAAAGCATTGGGTGGTCACCGAAGATCTCACTTTCTTAAGAAGAAAGCTAACCATCATTCACAAAAGGTGAAAACTCCTCTCTCAATTAGGGTTAGGAATAATAGAGCTAATTGTTTCATCGATGATAAGTATGATGGAGAAGAAATTGATGAGAAAAAGAAGTTAAGTTGTTATATTTGTGAGAAGGAGTTTTGCACAAACAATGCTTTGTATGGTCATATGAGATCTCATCCCGATAGGGTTTGTAAAGGAGTTAGTCCTCCTTCTTCCAACAATTCTAATTCGTCTACTCGGCAAAACAAAGAAGACGAAGATGATTACTCTTTGCCGAGATGGCAAAAGAGAGATAAAAGAGGTAGAAAATGTATTGGTAGTGCTGAGGCGGCATCTAATCTTTTGCATCTTCGATCAGATAAACACTTTTCTAATTTGTCTAGTGATGAGTCAAAAACTCATAAATTACCGGTTTCTCAATCTTATCATGAAAGAGATTTTCACATGTCTAATGATGATGAAACTCCTAAATTATTGATTCCTCGTCATAAAGGAGATATTTATAAGAGTGAGTCATCTATGAATGAGAATGAGAATCAAAAGAAAAAGCTCGGGATGAAAAATATTAAAATCTTTATAGGATCTTCTTCGAAGATTCGAAACAAAAATAATGAGAATGATGATGATGGTGATGAAACTGACGATAAGAAGTTAAAGAAAAGCAAAAGCTTATCTCAACTTCGTGTGAAAGAAGAAGAAGTTAATCATTATGATGAACAAAAGATATTGGATTTTGATTTGAATGAACCTTATGTTTTGGAGGATTAA | 942 | 0.3355 | MKRSRSVSNSENDYEVKINKIPVQDLKHKCNICGKAYDNGKALGGHRRSHFLKKKANHHSQKVKTPLSIRVRNNRANCFIDDKYDGEEIDEKKKLSCYICEKEFCTNNALYGHMRSHPDRVCKGVSPPSSNNSNSSTRQNKEDEDDYSLPRWQKRDKRGRKCIGSAEAASNLLHLRSDKHFSNLSSDESKTHKLPVSQSYHERDFHMSNDDETPKLLIPRHKGDIYKSESSMNENENQKKKLGMKNIKIFIGSSSKIRNKNNENDDDGDETDDKKLKKSKSLSQLRVKEEEVNHYDEQKILDFDLNEPYVLED | 313 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vifa1g05918 | 313 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 30 | 50 | IPR013087 | - | |
Vifa1g05918 | 313 | Pfam | C2H2-type zinc finger | 28 | 50 | - | - | |
Vifa1g05918 | 313 | Pfam | C2H2-type zinc finger | 97 | 119 | - | - | |
Vifa1g05918 | 313 | SUPERFAMILY | beta-beta-alpha zinc fingers | 28 | 117 | IPR036236 | - | |
Vifa1g05918 | 313 | ProSitePatterns | Zinc finger C2H2 type domain signature. | 97 | 117 | IPR013087 | - | |
Vifa1g05918 | 313 | SMART | c2h2final6 | 95 | 117 | IPR013087 | - | |
Vifa1g05918 | 313 | SMART | c2h2final6 | 28 | 50 | IPR013087 | - | |
Vifa1g05918 | 313 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 28 | 55 | IPR013087 | - | |
Vifa1g05918 | 313 | MobiDBLite | consensus disorder prediction | 253 | 290 | - | - | |
Vifa1g05918 | 313 | MobiDBLite | consensus disorder prediction | 121 | 151 | - | - | |
Vifa1g05918 | 313 | MobiDBLite | consensus disorder prediction | 259 | 290 | - | - | |
Vifa1g05918 | 313 | ProSiteProfiles | Zinc finger C2H2 type domain profile. | 95 | 117 | IPR013087 | - | |
Vifa1g05918 | 313 | Gene3D | Classic Zinc Finger | 26 | 117 | - | - | |
Vifa1g05918 | 313 | PANTHER | ZINC FINGER PROTEIN ZAT2-RELATED | 87 | 310 | - | - |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vifa1g05918 | 22 | 131 | C2H2 Transcription Factor Family | AT2G26940 | 35.398 | 1.28e-13 | 68.2 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TF | C2H2 | Vifa1g05918 | zf-C2H2_6 | 0.0032 | CL0361 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vifa1g05918 | - | - | psat:127096246 | 363.999 |