Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05916 ATGCCATTAACACCGAGTCCAACTCCGACTCACAAGAAGGTGAATTTTCTTGTGACTTCACGTTCTGTTGATGCTGCTCCAATTGTGGATAGTGATAGTAACAATCTAGGGAATTTGACCACAAGAGGAAAATTGTCGAGTGCTAGAAGTATTATGCCGAAATTGAACTTTCCGTATAATAGGACTTCATCATCTGATGTTGAAAAGGCGATAAGTTTTGCTCCGGAAAGTCCTTGTGAGAAGCCTTCTGTCTCTGGATCAGGATCAGTGTCTTTGAGTAAGCTGTTTGCTCCTAAGATTTATAGAACTTCTTCGCTACCGGTTGAAGAAATCGGGCGTGTTAATAATGAGTTTGCTTTTGGTGGATGTCTTGGTGCTTCTCCATATAGAAGCCAGGGATCAATAGCTCGCACTCGTTCAGAGCCGGTAGATAGCAAAGAAAAAATCATAAGGAAAATGGATAAGTTTTTCCGCATTATTCCTTCCACCCCAGGTGCAAAGGAAGTTAAAGAATGGTTAAAAGCTTCTGTAGAAAAGGATACAGAAAATGGCGGTGATGACGGTGAAGATATAGCTGAAGAGGAAGCTGTGTGTAGGATTTGTCTGATTGAGCTATGTGAAGGAGGTGAGACGCTGAAGATGGAATGCAGTTGCAAAGGTGAACTTGCATTGGCTCACCAAGAATGCGCTATCAAGTGGTTCAGTATCAGGGGTAACAAGACATGTGATGTGTGCAAGCAAGAAGTTCAGAATCTCCCTGTCACTCTCTTACGCATCCAAAATGTTCAAACTCAGAATACCGGAGCAAGGTCTCAGCAGGAAGACGACTTCAGGGTTTGGCAGGAGTTACCTGTGCTTGTCATTGTCAGCATGCTTGCTTATTTCTGTTTCCTTGAGCAGCTTTTGCAAGGAGTGGATATCAATGCAATCGATAGAATTTTGCTTCAATCTTCAAAGCCATTTCTTCACACTAATGTTGATTGCAATGCATTATTTTCTGCTGTGGTCAGCAGGCAGATAAATGTTGTTAAACTCCTTTTGCAGGTTGGTGTAAGACTTGATATCAAGGTCAAATTAGGAGCTTGGTCTTGGGAAACAGATACAGGAGAAGAATTCTGTGTTGGTGTCGGACTAGCCGAGCCTTTTCCAATCACATGGTGTGCTGTAGAATATTTTGAATCCACTGGCACTATACTCAACATGCTTCTCCATCACCTCTCACCTAATAGTTTTCACATGGGAAGAACTCTCTTGCACCACACCATCATTTGCAACAATGAAAGAGCATTGAATGTACTTCTGAATAATGGGGTTGATACAGAATTGGCCCTTCAAACTACTGAAGAAGAAACCAATCTATACCCTATTCACATGGCTGCACGCCTCGGACTATGCAACATTCTTCAATGTTTGATTAATGGTAACTGTAACTTGGACTCGCAAACAAAACTTGGTGACACGGCGTTGATGGTTTGCACAAGGTATAAACATGAGAAGTGTCTAAGAGTTTTAGTATCATCAGGAGCTGATTTGGGGATAGTAAATTCGTTTGGTCATTGCGCAACTTCAACAGCAACTTCTATTCATTGGACTAAAGAATATCAGAAAGCAGTTTTGGATATAATTAGAGCCATAAAGGTTGTTAAGTCTAGCAATGCGTCTAGATTTTCATCTTTGTTATTCGTCACTCACGCGAATGGCATAGAGGCTTTGAAAAAAGTCATTGAAAACAGAAACATAAATCTAGATGAGCAAAATGAGAGTGGATTTTCAGCTGTCATGATATCTGCTTCAGAGGGTAGCGTGGAGGCATTCAAGTTGCTTCTTCACGCTGGAGCTGATGTAACCAATCTTAAAAACAAAGATGGTTTAACAGCTCTAGATATCATAGATTTGAAACAAAATGGTGAAGATGGTCATAAGGTGATGTTTGAATATGCACTTAAAAAGGGATGTTTGAATATTAGTACTTTAGCCGAAGCGAATACTCTTCACCGTGCAGCTTGTTATGGAGATATAAACATGGTTGAAAAACTACTAAAGGAAGGGAATTACGATGTGAATGGTTTTGATGAAAATGGATATACACCATTGATGTTAGCTGCCAGAGAAAGTAATGGAGAAATGTGTGGCCTTTTGATATCTCATGGAGCAAAATGTGATATTAAGAATGAAAGACATGAAACAACACTTTTACTTGCAAGAGAAAAAAATTTGAAAGGAAATGATGCAAAGAATGTGATCATGGATGAGTTGGCTAGAAGAGTAGTATTGTGCGGTGCGCGTGTGAAGAAACATACAAAATGTGGTAAAGGACTTTCATGA 2325 0.4009 MPLTPSPTPTHKKVNFLVTSRSVDAAPIVDSDSNNLGNLTTRGKLSSARSIMPKLNFPYNRTSSSDVEKAISFAPESPCEKPSVSGSGSVSLSKLFAPKIYRTSSLPVEEIGRVNNEFAFGGCLGASPYRSQGSIARTRSEPVDSKEKIIRKMDKFFRIIPSTPGAKEVKEWLKASVEKDTENGGDDGEDIAEEEAVCRICLIELCEGGETLKMECSCKGELALAHQECAIKWFSIRGNKTCDVCKQEVQNLPVTLLRIQNVQTQNTGARSQQEDDFRVWQELPVLVIVSMLAYFCFLEQLLQGVDINAIDRILLQSSKPFLHTNVDCNALFSAVVSRQINVVKLLLQVGVRLDIKVKLGAWSWETDTGEEFCVGVGLAEPFPITWCAVEYFESTGTILNMLLHHLSPNSFHMGRTLLHHTIICNNERALNVLLNNGVDTELALQTTEEETNLYPIHMAARLGLCNILQCLINGNCNLDSQTKLGDTALMVCTRYKHEKCLRVLVSSGADLGIVNSFGHCATSTATSIHWTKEYQKAVLDIIRAIKVVKSSNASRFSSLLFVTHANGIEALKKVIENRNINLDEQNESGFSAVMISASEGSVEAFKLLLHAGADVTNLKNKDGLTALDIIDLKQNGEDGHKVMFEYALKKGCLNISTLAEANTLHRAACYGDINMVEKLLKEGNYDVNGFDENGYTPLMLAARESNGEMCGLLISHGAKCDIKNERHETTLLLAREKNLKGNDAKNVIMDELARRVVLCGARVKKHTKCGKGLS 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05916 774 ProSiteProfiles Ankyrin repeat region circular profile. 588 615 - -
Vifa1g05916 774 SUPERFAMILY Ankyrin repeat 412 735 IPR036770 -
Vifa1g05916 774 ProSiteProfiles Ankyrin repeat profile. 484 516 IPR002110 GO:0005515
Vifa1g05916 774 ProSiteProfiles Ankyrin repeat region circular profile. 693 725 - -
Vifa1g05916 774 SUPERFAMILY RING/U-box 194 249 - -
Vifa1g05916 774 Coils Coil 568 588 - -
Vifa1g05916 774 Gene3D - 534 649 IPR036770 -
Vifa1g05916 774 ProSiteProfiles Ankyrin repeat profile. 588 620 IPR002110 GO:0005515
Vifa1g05916 774 SMART ANK_2a 588 617 IPR002110 GO:0005515
Vifa1g05916 774 SMART ANK_2a 413 442 IPR002110 GO:0005515
Vifa1g05916 774 SMART ANK_2a 484 513 IPR002110 GO:0005515
Vifa1g05916 774 SMART ANK_2a 451 480 IPR002110 GO:0005515
Vifa1g05916 774 SMART ANK_2a 693 722 IPR002110 GO:0005515
Vifa1g05916 774 SMART ANK_2a 659 689 IPR002110 GO:0005515
Vifa1g05916 774 SMART ANK_2a 326 355 IPR002110 GO:0005515
Vifa1g05916 774 ProSiteProfiles Ankyrin repeat profile. 693 725 IPR002110 GO:0005515
Vifa1g05916 774 PANTHER OS02G0165000 PROTEIN 3 303 - -
Vifa1g05916 774 CDD RING_CH-C4HC3_MARCH 198 246 - -
Vifa1g05916 774 Gene3D - 301 449 IPR036770 -
Vifa1g05916 774 Gene3D - 450 533 IPR036770 -
Vifa1g05916 774 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 184 253 IPR013083 -
Vifa1g05916 774 Gene3D - 650 748 IPR036770 -
Vifa1g05916 774 Pfam RING-variant domain 198 245 IPR011016 GO:0008270
Vifa1g05916 774 Pfam Ankyrin repeats (3 copies) 643 724 IPR002110 GO:0005515
Vifa1g05916 774 Pfam Ankyrin repeats (3 copies) 431 513 IPR002110 GO:0005515
Vifa1g05916 774 ProSiteProfiles Zinc finger RING-CH-type profile. 190 252 IPR011016 GO:0008270
Vifa1g05916 774 SMART ringv_2 197 246 IPR011016 GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05916 Vifa-Chr1 927285904 927289195 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05916 186 252 C3H Transcription Factor Family AT2G37950 42.647 5.62e-14 69.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05916 - - mtr:11444172 757.673