Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05902 ATGATTCACAAAACCATGTCTTCCCCACTCTTCTTCCTCGTCTTCACAATATTCACTTTCTGGGTATTCTTCACTTCATCCCAAGCTGAAGAAGACGACGTAAGATGTCTCCGAGGTATCAAAGAATCCCTAGGAAACTCTGAAAGTGGTATTTCATCATGGAGTTTCAACAACGACACCGTAGGTTTCATCTGCGATTTTACTGGTGTCACTTGCTGGAACGTGAGAGAGAATCGAGTTTTGGGTTTGGAGCTAAAGGGTATGCAGCTTAAGGGTTCAATTCCGAATACTCTTGTGAATTGTTCGTATTTGAATGAGTTGGTGTTATCTGATAATCATCTTAGTGGTAGAATACCTTATGAAATTGGTAGTTTAACTAGGCTTCATAAGTTTTCTGTTGCTAATAATCAGCTTAGTGGGAGTATTCCATCGTTTTTCAATCGTTTTGATAAGGATGGTTTTGATGGGAATAGTGGTTTATGTGGTGGTCCTCTTGGTTCAAAGTGTGGTAGTATGAGTAAGAAGAATCTTGCTATTATTATTGCTGCTGGTGTTTTCGGTGCTGCGGCTTCATTGTTGTTGGCTTTTGGGTTATGGTGGTGGTATCATATTAGGTTGAGGAGGGAGAGGAGTAAGGAAGGGTATGTTGTTGGTGGTGTCGACGATTGGGCGTTGAGGTTGAGAGGTCATAAGCTTGCTCAGGTTAATCTTTTTCAGAAACCGATTGTTAAGGTTAAGCTTGGTGATTTGATGGCTGCGACGAATAATTTTAGTTCGGAGAATGTGTTGATTACGACGAGGACGGGTGCGACGTATAGGGCGGATTTACCGGATGGTTCGACGCTTGCGGTGAAGAGGTTGAGTACTTGTAAGATTGGTGAGAAGCAGTTTAGGATGGAGATGAATCGGTTGGGACAGGTTAGGCATCCGAATTTGGCGCCTTTGTTAGGTTATTGTGTCGTGGAAGAGGAGAAGCTTTTGGTTTATAAGCATATGTCGAACGGGACGCTTTATTCGTTGTTGCATAAGAATAACAGTGCATTGGATTGGTTGATGAGGTTTAGGATAGGGTTGGGTGCGGCGAGGGGGCTTGCGTGGTTGCATCATGGTTGTCATCCTCCGATTATTCAGCAAAATATTTGTTCTAATGTGATTCTTGTTGACGAAGAATTCGATGCTCGGATAATGGACTTTGGACTCGCGAGGCTTATGACGTCCGACTCCAACGGTAGTTTTGTGAATGGCGATTTAGGGGAACTCGGTTATATTGCTCCGGAGTATTCGAGTACGATGGTTGCTTCGTTGAAAGGGGATGTGTATGGATTCGGAGTTTTGCTTTTGGAGTTGGTCACAGGGTGCAAACCTCTCGAGGTGAACCGTGGCGATGAAGAATTTAAAGGTAACTTGGTGGATTGGGTGAATGTGCATTCTAGTTCAGGTAGACTCAAGGATTGCATCGACAGAGCGATAAGTGGAAAAGGTAACGACGAGGAGATTCTGCAGTTTCTGAAAATCGCATCCAATTGCATCGTTTCTCGCCCAAAAGATAGGTGGTCTATGTATCAAGTATATCATTCGTTGAAAACCATTTCCAAAGACAATAGTTTCTCCGAACAAGACGATGAATTTCCATTGATCTTCGGTAAGCCAGAAAACGAGCCGTCCTAG 1668 0.4335 MIHKTMSSPLFFLVFTIFTFWVFFTSSQAEEDDVRCLRGIKESLGNSESGISSWSFNNDTVGFICDFTGVTCWNVRENRVLGLELKGMQLKGSIPNTLVNCSYLNELVLSDNHLSGRIPYEIGSLTRLHKFSVANNQLSGSIPSFFNRFDKDGFDGNSGLCGGPLGSKCGSMSKKNLAIIIAAGVFGAAASLLLAFGLWWWYHIRLRRERSKEGYVVGGVDDWALRLRGHKLAQVNLFQKPIVKVKLGDLMAATNNFSSENVLITTRTGATYRADLPDGSTLAVKRLSTCKIGEKQFRMEMNRLGQVRHPNLAPLLGYCVVEEEKLLVYKHMSNGTLYSLLHKNNSALDWLMRFRIGLGAARGLAWLHHGCHPPIIQQNICSNVILVDEEFDARIMDFGLARLMTSDSNGSFVNGDLGELGYIAPEYSSTMVASLKGDVYGFGVLLLELVTGCKPLEVNRGDEEFKGNLVDWVNVHSSSGRLKDCIDRAISGKGNDEEILQFLKIASNCIVSRPKDRWSMYQVYHSLKTISKDNSFSEQDDEFPLIFGKPENEPS 555
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05902 555 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 219 331 - -
Vifa1g05902 555 Gene3D Transferase(Phosphotransferase) domain 1 332 551 - -
Vifa1g05902 555 PANTHER LEUCINE-RICH REPEAT RECEPTOR PROTEIN KINASE EMS1 57 149 - -
Vifa1g05902 555 SUPERFAMILY L domain-like 32 147 - -
Vifa1g05902 555 Pfam Protein tyrosine and serine/threonine kinase 279 524 IPR001245 GO:0004672|GO:0006468
Vifa1g05902 555 ProSiteProfiles Protein kinase domain profile. 257 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05902 555 SUPERFAMILY Protein kinase-like (PK-like) 237 527 IPR011009 -
Vifa1g05902 555 Gene3D Phosphorylase Kinase; domain 1 219 331 - -
Vifa1g05902 555 FunFam Inactive LRR receptor-like serine/threonine-protein kinase BIR2 332 549 - -
Vifa1g05902 555 Pfam Leucine rich repeat N-terminal domain 31 73 IPR013210 -
Vifa1g05902 555 Gene3D Ribonuclease Inhibitor 32 158 IPR032675 -
Vifa1g05902 555 FunFam Leucine-rich repeat receptor-like kinase 32 160 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05902 Vifa-Chr1 924814416 924816233 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05902 9 553 Receptor kinase-like Gene Family AT3G28450 58.167 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-Xa Vifa1g05902 PK_Tyr_Ser-Thr 2.5e-28 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05902 - - gmx:100814544 821.231