Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05901 ATGTATGGTGATTGTCAAGTTATGTCAACAATGAGAGGTGGAAATGTAGTAACAAACTCAGAATCTCTCTTCTCTTCTCCGATCCACAACGCTAACTTCAACTTCATGCCAACCATGCCTTTTCAACCTTTTTCTTCCTCCATGAAAGAAGAAGATGGAATTTTGAGAGGGAAAGAAGAGATAATGGATCAAAGTGGTTCAGGTAGTGAACAAGTTGAAGACAAGTCAGGGAATGAACAAGAGATCAATAATGAAGAACAACAAGCTGCAAAGAAGAAACGTTATCATAGACACACTGTTCGTCAGATCCAAGAAATGGAAGCTTTGTTCAAGGAATGTCCACACCCAGATGATAAACAAAGAATGAAACTAAGCCATGATTTAGGACTGAAACCACGCCAGGTTAAATTCTGGTTTCAGAATCGTCGAACTCAGATGAAGGCACAACAAGATCGTTCAGATAATGTGATACTTAGAGCAGAAAATGAAGGCTTAAAGAATGAGAATTATCGGTTACAAGCTGCTTTACGTAATATTATATGTCCTAACTGTGGTGGGCCATGTATTATGGGCCCTGATATGGGCTTGGATGATCATCAACTTCGAATTGAAAATGCACGTTTAAGAGAAGAGCTAGAACGTGTGTGTTGTATAACATCAAGATACACTGGTCGTTCACTCCAAACAATGGCACCACCTCCATCTCTTATGCCACCATCTCTAGATTTGGACATGAACATATACCCAACAAGACATTTTGTTGATCATATTTCACCATGCACAGAAATGATTCCTGTCCCTATGTTACCATCTGAATCATCACATTTTCAAGAGGGTGGCCTTTTACTCATGGAAGATGAGAAATCATTGGCTATGGAACTTGCGGCTTCTTCTATGACTGAGCTTGTTAAAATGTGTCAGATGAATGAACCGCTTTGGATTCGGAACAGTGAGAATGAAAGGGAAGTTCTTAATTTTGATGAGCATGCTAGGCTTTTTCAATGGCCTCTGAATCTTAAGCAGAGAAGTGAGTTGAGGACAGAAGCTACACGTGATAATGCTGTTGTTATCATGAATAGTGTCACTCTTGTTGATGCTTTTCTTGATGCTCAAAAATGGATGGATTTGTTTCCAACAATAGTTGCTAGAGCAAGAACTGTCCAAATTATAGCTTCTGGTGCTTCTGGTCATGCAAGTGGGACTCTTCAGCTGATGCATGCAGAATTCCAAGTTCTTTCTCCATTGGTGTCCACTAGAGAGACTCATTTTCTTAGATACTGTCAGCAAAATGCCGAGGAAGGAACTTGGGCCATTGTTGATTTTCCTGTTGACAGCTTCCACCAAAACTTTCATCATTCATATCCCAAATACTGCAGAAGGTCCTCTGGCTGTGTGATTCAAGATATGCCAAATGGCTATTCAAGGGTAACATGGGTTGAGCATGCAAAGGTTATAGAGAAACCTGTTCATCAAATATTCAGTAACTATGTCTATAGTGGAATGGCATTTGGTGCACAACGTTGGTTAGGAGTTTTGCAGAGACAATGTGAAAGGGTTGCAAGTCAAATGGCTAGAAACATATCTGATCTTGGAGTGATACCTTCTCCGGAGGCGCGAAAGAACTTGATGAAACTAGCTAACAGGATGATAAAAACTTTTAGTCTTAACATGACTACTTGTGGTGGTCAGTCATGGACTGCTATATCAGATTCACCAGAAGACACTGTTAGAATCACAACTAGGAAAATCACTGAGCCTGGCCAACCTAATGGCGTGATTCTCGCAGCCGTTTCAACCACTTGGCTTCCTTATTCTCATACCAAGGTCTTTGATCTCCTCCGTGACGAACGCCACAGATCTCAGATGGATGCTCTTTCTAATGGGAACTCATTGAATGAAGTGGCTCATATTGCAAATGGTTCACATCCTGGAAACTGCATTTCCCTTCTTCGCATAAATGTAGCGAGTAACTCATCACAAAATGTAGAGCTAATGCTGCAAGAGAGTTGCACAGATCAATCAGGAAGCTTACTAGTCTACACTACAATCGATGTCGATTCAATACAGCTAGCCATGAGTGGTGAAGACCCTTCATGCATTGCACTTCTTCCACAAGGGTTCATGATAGTCCCAATGGTTTCATCAAATACCGACACATCAAGCCTTGTTGGAAATTCATCTGATCAAGGAACACCATCATCACCAACTACTACTAATGCTGCTGCTGCTGCTGCTAACTCAGGTTGTCTTCTTATCATGGGAATGCAAGTACTAGCAAGCACAATTCCTTCTGCAAAGCTTAACCTTTCAAGTGTCACAGCAATCAATAACCACCTCTGCAACACCCTGCATCAAATTGAAAGTGCTCTCTGTAGCACCACTAACAATTACCTTGTTGGATCTTGCAATGAACCAATCACTAGTGCACCTCCCAAGTAG 2439 0.4121 MYGDCQVMSTMRGGNVVTNSESLFSSPIHNANFNFMPTMPFQPFSSSMKEEDGILRGKEEIMDQSGSGSEQVEDKSGNEQEINNEEQQAAKKKRYHRHTVRQIQEMEALFKECPHPDDKQRMKLSHDLGLKPRQVKFWFQNRRTQMKAQQDRSDNVILRAENEGLKNENYRLQAALRNIICPNCGGPCIMGPDMGLDDHQLRIENARLREELERVCCITSRYTGRSLQTMAPPPSLMPPSLDLDMNIYPTRHFVDHISPCTEMIPVPMLPSESSHFQEGGLLLMEDEKSLAMELAASSMTELVKMCQMNEPLWIRNSENEREVLNFDEHARLFQWPLNLKQRSELRTEATRDNAVVIMNSVTLVDAFLDAQKWMDLFPTIVARARTVQIIASGASGHASGTLQLMHAEFQVLSPLVSTRETHFLRYCQQNAEEGTWAIVDFPVDSFHQNFHHSYPKYCRRSSGCVIQDMPNGYSRVTWVEHAKVIEKPVHQIFSNYVYSGMAFGAQRWLGVLQRQCERVASQMARNISDLGVIPSPEARKNLMKLANRMIKTFSLNMTTCGGQSWTAISDSPEDTVRITTRKITEPGQPNGVILAAVSTTWLPYSHTKVFDLLRDERHRSQMDALSNGNSLNEVAHIANGSHPGNCISLLRINVASNSSQNVELMLQESCTDQSGSLLVYTTIDVDSIQLAMSGEDPSCIALLPQGFMIVPMVSSNTDTSSLVGNSSDQGTPSSPTTTNAAAAAANSGCLLIMGMQVLASTIPSAKLNLSSVTAINNHLCNTLHQIESALCSTTNNYLVGSCNEPITSAPPK 812
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05901 812 CDD START_ArGLABRA2_like 288 517 - -
Vifa1g05901 812 ProSitePatterns 'Homeobox' domain signature. 124 147 IPR017970 GO:0000981|GO:0006355
Vifa1g05901 812 CDD homeodomain 92 150 IPR001356 GO:0003677
Vifa1g05901 812 SMART START_1 293 518 IPR002913 GO:0008289
Vifa1g05901 812 SMART HOX_1 90 153 IPR001356 GO:0003677
Vifa1g05901 812 ProSiteProfiles 'Homeobox' domain profile. 89 149 IPR001356 GO:0003677
Vifa1g05901 812 Gene3D - 300 501 IPR023393 -
Vifa1g05901 812 MobiDBLite consensus disorder prediction 719 738 - -
Vifa1g05901 812 MobiDBLite consensus disorder prediction 74 92 - -
Vifa1g05901 812 Gene3D - 76 159 - -
Vifa1g05901 812 FunFam Homeobox-leucine zipper protein HDG1 77 165 - -
Vifa1g05901 812 Pfam Homeodomain 92 147 IPR001356 GO:0003677
Vifa1g05901 812 SUPERFAMILY Homeodomain-like 85 150 IPR009057 -
Vifa1g05901 812 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 88 790 IPR042160 -
Vifa1g05901 812 Pfam START domain 294 518 IPR002913 GO:0008289
Vifa1g05901 812 ProSiteProfiles START domain profile. 284 521 IPR002913 GO:0008289
Vifa1g05901 812 SUPERFAMILY Bet v1-like 546 788 - -
Vifa1g05901 812 MobiDBLite consensus disorder prediction 62 97 - -
Vifa1g05901 812 SUPERFAMILY Bet v1-like 286 520 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05901 Vifa-Chr1 924742511 924746476 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05901 8 803 Homeobox Transcription Factor Family AT5G46880 55.164 0.0 851
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g05901 START 4.6e-36 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05901 - - psat:127119778 1548.87
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05901 1 924742511 924746476 Vifa1g05901 1 924742511 924746476 ECH
Vifa1g05901 1 924742511 924746476 Vifa3g02976 3 836901673 836905771 ECH