Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05896 ATGATCCCGGTGATGCAGAGTTTGAACCTACAACAAGCAGTCGTGGTGCAAACAAGGTGGTCTATTTGGAAGCACAGATTATTGGGGATTTTAGATTTTCTCATATTTTTCGATTTTAGGGGTTTGTTAGGTATGAATGATTTTGAGTTTGGTGAGATTCTTGAAGTTGTTGTCATCATTGACAGAACCACCGGAAAATCAAAAGGATATGGCTTTGTTACTTTTGAGTATCCAAATTCTGCTATAATAGCTTGCCAGAATCCTAATCCTGTGATTGATGGAAGAAGAACTAATTGTAATCTTGCATTTCAAAAATCTAATCCATCATCATCAACATCAACAGGAAGGCAGAAGTTCCATAGTCTTTCATGTCATTATCCACCAATTAGGGATGTATCAAGCAATTCATTGAAAGGAGCTATACCTTCCTCTATCGGCCGTCTCTCACATTTTCAAGTTTTGAACCCGCCCACCAATTTCTTTTCCGGTGAAATCCCGGACATTGGAGTACTAAGCACTCCTATGTGCTCTTGCCTTGTTTATTGGAAATTTAGATCTTTGTGGAAGGCAAATCCAAAAGCCATGTCAAACATCACTTGTTTTCCTGTCGTGATACCGCATGATGCTTCCCTCCGAAAACATCTTCTTCGCATTACTTAA 660 0.3909 MIPVMQSLNLQQAVVVQTRWSIWKHRLLGILDFLIFFDFRGLLGMNDFEFGEILEVVVIIDRTTGKSKGYGFVTFEYPNSAIIACQNPNPVIDGRRTNCNLAFQKSNPSSSTSTGRQKFHSLSCHYPPIRDVSSNSLKGAIPSSIGRLSHFQVLNPPTNFFSGEIPDIGVLSTPMCSCLVYWKFRSLWKANPKAMSNITCFPVVIPHDASLRKHLLRIT 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05896 219 Gene3D Ribonuclease Inhibitor 102 181 IPR032675 -
Vifa1g05896 219 Gene3D - 36 101 IPR012677 -
Vifa1g05896 219 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 48 104 IPR000504 GO:0003723
Vifa1g05896 219 SMART rrm1_1 33 100 IPR000504 GO:0003723
Vifa1g05896 219 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 49 87 IPR000504 GO:0003723
Vifa1g05896 219 SUPERFAMILY RNA-binding domain, RBD 49 117 IPR035979 GO:0003676
Vifa1g05896 219 PANTHER BOULE-RELATED 50 137 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05896 Vifa-Chr1 923765664 923767393 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05896 50 105 C2H2 Transcription Factor Family AT2G19380 42.857 6.73e-08 50.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05896 - K25006 cam:101508568 113.235