Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05893 ATGGTAGAAGGAGGAAGAATGCGATTATCCGAGGAAGCTAGAAATGGGTTAGAATTTTTGAAACGCAAGAGGCTTCAGCGTGCACAAGCCGTTGCCGCCTCTCAGACTAGTGTTGCTAACATGATGAATAGAAGTGGAGGAGATGCTTTGAGAGCTTCAGCTTCATGTGGTACAAGATTGCACAGTGATCCGGATGTCTTTTTCAAACGGAAGGTGGATAAGTTTGATACAAGTGATTTGGAATGGACTGAGAACATTCCGGAATGTCCTGTATATTCTCCGACGAAGGAGGAATTTGAAGATCCTTTGATTTACTTGCAGAAGATAGCTCCAGAAGCTTCTAAATATGGTATATGCAAGATTGTTTCGCCTTTGAGTGCTTCTGTACCTGCTGGGGTTGTTTTAATGAAAGAGAAAGCAGGATTCAAGTTTACAACTAGAGTACAGCCCCTTCGCCTTGCTGAATGGGACACTGAAGACAAAGTCACATTTTTTATGAGTGGAAGAAATTATACATTCCGCGATTATGAGAAAATGGCAAACAAGGTTTTTGCACGAAGATATTGTAGCTCTGGATGTCTTCCAGCCACTTACTTGGAAAAGGAGTTTTGGCATGAAATTGGTTGTGGGAAAATGGACACTGTTGAATATGCATGTGATGTTGATGGTAGTGCATTTTCATCTTCTCCTACTGATCAGCTTGGGAACAGCAAATGGAATTTAAAGAATCTTTCCCGTTTGCCCAAATCAACTTTGCGTCTCTTGGAAACTTCAATTCCGGGAGTAACAGAACCCATGCTATACATTGGAATGCTGTTTAGTATGTTTGCGTGGCACGTGGAGGATCATTATTTGTACAGCATCAATTATCAGCATTGTGGTGCATCAAAAACATGGTATGGTATCCCTGGTCATGCAGCTTTGGAATTTGAAAGGGTAGTGAGAGAACATGTATATACTACTGATATTTTGTCAAGCGACGGGGAAGACGGAGCCTTTGATGTTCTCCTGGGGAAAACTACTTTATTTCCGCCTAATATTTTATTGGACCATAAAGTCCCTGTCTATAAAGCTGTTCAAAAGCCAGGAGAGTTTGTAATAACCTTCCCTAGAGCGTATCATGCAGGCTTCAGTCATGGTTTCAACTGTGGAGAAGCGGTGAACTTTGCACTTGATGATTGGTTTCCTCTTGGAGCTATTGCGAGCCGGCGATATGCACTTCTTAACAGGGTTCCTTTACTGCCCCATGAAGAACTTCTTTGCAAAGAAGCGATGCTTATTCATTCATGCGTGGAACTTGAAGATTCAGACTTTCCTTCCCCAGACTTGTTATCTCCTAATACAACCAAGATATCTTTCATTAACTTGTTGCGTTTCCAGCACTGTGCCAGTTGGTTGCTAATGAAATCAAGGGCATGTACTAGTGTTTCTTCACATTCGCATGGCACAATTCTCTGTAGCCTGTGCAAACGTGACTGTTACATTGCTTATGTTGACTGCAGCTGTCACATGCATCCTGTATGCCTACGTCATGAAGTTAAATCTCTTGACTTCAGCTGTGGGAACAAGCACACTCTATATTTGAGAGATGATATTGGGGACATGGAAGCTGCAGCCAAGATGTTTGAGCAGGAGGATGGGATATTGGATGAGATAGGCAAGCAATCCAAAAGTGAACAAAATATGTATTCATATCCTTTGTCAGATATGTTTCAGAGAGCTGAAGCAAGTGGATATGAACCGTATTGTGAGCTTAAATTTGATTCTATGGAGTTTTATACAACTCCAGAACAGGCAACAAATAATCAAGAGTGTGGCATACAAAGTCAATTTGGATTAGGACATTACTCAGAAAACCATAAACCAGAAGTGTCCGAGGTTTCCTTTTCTGCTGCATCAACTCTTTGTTCTCTTTCAGAACATCTTGAGTGTTCCTCTGCTAATAAAGATGTCGAGGTGCAGACTAACTTGAAAGTGGACATTATTGATTGCAAAGAACTTGGTGAAACAATATCCAACAATGCATGCAGATCTTCACTATTCCCTGCTCGGTATCATGAAAGCTCGGTTAAAGTGCATGATCTTCAGAAACCTGATGTGAAGCCTATAGTGGATAATGACAGTGATGATTCTGATTCAGGAATATTTAGGGTAAAGCGCCCTGCCTCTCTAAAAGCAGAGAAAAGAAATTTGAAGGTTGTGGCTACGAAACATTCTGAGCAGCAGGGACTTAAACGATTGAAGAAAGTCCTTCCTGAAGGAAAAAGCAACAGGCAACAAATGAATGTCAGACCCAGTGAATCAAGTTATAAATATAACCCAGTTAGTCATAAAGTTGATATCGGAATTTCCTCTAAGGACAGATTTGCAAGGGGAAATGACACTCCCATTCCTGTAAGATATAAAAAGTCAGGCAATGAGGAAGTAAGTATGCATATGCAACTAAATCACCACCGGAGAGAAAGGTTTCAGCAAACTTATAGAGAAGCGTCATCCATTGAGATTGGGTCTAAGCGACTTAAAGTCCGAGGCCCTTCATTTTTGGGCTTAGAGAGCAGGTTGAATTGA 2568 0.412 MVEGGRMRLSEEARNGLEFLKRKRLQRAQAVAASQTSVANMMNRSGGDALRASASCGTRLHSDPDVFFKRKVDKFDTSDLEWTENIPECPVYSPTKEEFEDPLIYLQKIAPEASKYGICKIVSPLSASVPAGVVLMKEKAGFKFTTRVQPLRLAEWDTEDKVTFFMSGRNYTFRDYEKMANKVFARRYCSSGCLPATYLEKEFWHEIGCGKMDTVEYACDVDGSAFSSSPTDQLGNSKWNLKNLSRLPKSTLRLLETSIPGVTEPMLYIGMLFSMFAWHVEDHYLYSINYQHCGASKTWYGIPGHAALEFERVVREHVYTTDILSSDGEDGAFDVLLGKTTLFPPNILLDHKVPVYKAVQKPGEFVITFPRAYHAGFSHGFNCGEAVNFALDDWFPLGAIASRRYALLNRVPLLPHEELLCKEAMLIHSCVELEDSDFPSPDLLSPNTTKISFINLLRFQHCASWLLMKSRACTSVSSHSHGTILCSLCKRDCYIAYVDCSCHMHPVCLRHEVKSLDFSCGNKHTLYLRDDIGDMEAAAKMFEQEDGILDEIGKQSKSEQNMYSYPLSDMFQRAEASGYEPYCELKFDSMEFYTTPEQATNNQECGIQSQFGLGHYSENHKPEVSEVSFSAASTLCSLSEHLECSSANKDVEVQTNLKVDIIDCKELGETISNNACRSSLFPARYHESSVKVHDLQKPDVKPIVDNDSDDSDSGIFRVKRPASLKAEKRNLKVVATKHSEQQGLKRLKKVLPEGKSNRQQMNVRPSESSYKYNPVSHKVDIGISSKDRFARGNDTPIPVRYKKSGNEEVSMHMQLNHHRRERFQQTYREASSIEIGSKRLKVRGPSFLGLESRLN 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05893 855 SUPERFAMILY Clavaminate synthase-like 167 422 - -
Vifa1g05893 855 Pfam JmjC domain, hydroxylase 266 389 IPR003347 -
Vifa1g05893 855 ProSiteProfiles JmjC domain profile. 236 406 IPR003347 -
Vifa1g05893 855 Pfam C5HC2 zinc finger 486 537 IPR004198 -
Vifa1g05893 855 ProSiteProfiles JmjN domain profile. 89 130 IPR003349 -
Vifa1g05893 855 SMART JmjN_1 88 129 IPR003349 -
Vifa1g05893 855 Gene3D Cupin 89 438 - -
Vifa1g05893 855 SMART cupin_9 236 406 IPR003347 -
Vifa1g05893 855 Pfam jmjN domain 90 122 IPR003349 -
Vifa1g05893 855 PANTHER LYSINE-SPECIFIC DEMETHYLASE 81 825 - -
Vifa1g05893 855 FunFam Lysine-specific demethylase isoform A 84 433 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05893 Vifa-Chr1 923048588 923054673 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05893 86 424 JUMONJI Transcription Factor Family AT1G30810 36.318 4.14e-62 223
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR Jumonji Vifa1g05893 JmjC 6.1e-39 CL0029
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05893 - - psat:127119779 1661.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05893 1 923048588 923054673 Vifa1g05893 1 923048588 923054673 ECH