Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05889 ATGGGAAGGCCTCCTTGTTGTGACAAAACCAATGTGAAAAGAGGTTTATGGACTCCTGAGGAAGATGCTAAAATTCTTGCTTATGTTGCTAATCACGGAATCGGAAATTGGACATTGGTTCCAAAGATAGCCGGTTTGAATCGATGCGGTAAGAGTTGTAGACTAAGATGGACTAATTATCTAAGACCTGATTTGAAGCATGATGGTTTTACACCTCAAGAAGAAGAATTGATTATTACTCTTCATGCAGCTATAGGAAGCAGATGGTCATTAATTGCAAAAAGACTACCTGGAAGAACAGACAATGATGTGAAGAATTATTGGAACACAAAACTAAGAAAGAAGCTTATGAAAATGGGAATTGATCCAGTGACTCATAAGCCAGTTTCACAAGTTCTTTCTGATTTAGGAAGCATTAGTAGCCTTACCACAATAACCACTCAAAACCAAATGAGTTTTGTCAATAACAACTCAATTTTGGAGCATCCAAAAGAGGAGCAAGTTCAATATCACCACCAATTCACAAACCAAGAGAGTTTCCAGCAACAATATGTTTTGAATGAAGTTGCATCTTCAACTTCATCATCATGTTCCTCTAATTTAACAAGGCTAAGCTCGCCAATTTCGTACTCGTGCAAAACATCACAAGCTCAAGTTAATCCTAACTTTGATTGGAGTGAGTTTCTTCACAATGACGAGCCTTTTATATGGTCGGAGATTCAACAGATTCAACAATGTGATATACAAAGGGTGATGTCGTCGTTGAGCCTCGGTTTATTGCCAAATGAAGGTGAAGTTTCTAATATTAATAATAATTATAATAGGAATGGAAATGATAAACAAGGTGGTTCAAGTGAAGGTTTTGATGCTGTTGCTTGTGTTGCAAGTAAGGAATATGAAATGAATAAGCAAAGTGAAGGAAATTCATTTTCAGGGAATGAATTTGTGGATGGTATTTTGGATAAGGATAGTGAGATAAGGGCAACATTTCCAGAGTTTTTAGATGCTTCTTTTGATTATTGA 1023 0.3646 MGRPPCCDKTNVKRGLWTPEEDAKILAYVANHGIGNWTLVPKIAGLNRCGKSCRLRWTNYLRPDLKHDGFTPQEEELIITLHAAIGSRWSLIAKRLPGRTDNDVKNYWNTKLRKKLMKMGIDPVTHKPVSQVLSDLGSISSLTTITTQNQMSFVNNNSILEHPKEEQVQYHHQFTNQESFQQQYVLNEVASSTSSSCSSNLTRLSSPISYSCKTSQAQVNPNFDWSEFLHNDEPFIWSEIQQIQQCDIQRVMSSLSLGLLPNEGEVSNINNNYNRNGNDKQGGSSEGFDAVACVASKEYEMNKQSEGNSFSGNEFVDGILDKDSEIRATFPEFLDASFDY 340
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05889 340 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa1g05889 340 Gene3D - 68 131 - -
Vifa1g05889 340 PANTHER F14D16.11-RELATED 1 340 - -
Vifa1g05889 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 65 IPR017930 -
Vifa1g05889 340 Gene3D - 7 67 - -
Vifa1g05889 340 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa1g05889 340 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 70 116 IPR017930 -
Vifa1g05889 340 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa1g05889 340 Pfam Myb-like DNA-binding domain 70 110 IPR001005 -
Vifa1g05889 340 CDD SANT 17 61 IPR001005 -
Vifa1g05889 340 CDD SANT 70 112 IPR001005 -
Vifa1g05889 340 FunFam Transcription factor RAX3 7 67 - -
Vifa1g05889 340 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa1g05889 340 FunFam transcription factor MYB80 69 129 - -
Vifa1g05889 340 SMART sant 66 114 IPR001005 -
Vifa1g05889 340 SMART sant 13 63 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05889 Vifa-Chr1 922613838 922615974 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05889 1 340 MYB Transcription Factor Family AT3G28470 45.682 8.18e-84 254
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g05889 Myb_DNA-binding 1.6e-15 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05889 K09422 - gmx:100815077 414.461