Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05882 ATGGAGCTATTTCCAGCTCAACCAGATTTATCTTTGCAAATTAGTCCTCCAAACACAAAACCAACATCAAGCAATTGGAAGAGAACAACAACTGAAGAAGAAATGGATTTGGGGTTTTGGAAAAGAGCTTTGGATTCAAGAAACTCTTTATCATCATCATCTTCATCAATGGCTACTACTACTACTTCTACTAAAACTCATGATAATTACACTTTTGACCTCTCTCTTTCAAATCCAACAAAGCCTTTAGATTCAAACAACACTCCTTCCAATAACCTCATTCATCATCATCACTTCCAAAATAATGGTAACAACAACAATAATGCAATTGCAAACCCTTTTCAATCTTTTCAACAAAACCATTACTTTCAACACCCCCAACCTTTCTTTCAACACCACCACCCCCAAAACCAAAGCTTAAGTCAAGAACTTGGTTTTCTTAGACCTATTAGAGGAATTCCTGTCTATCAAAACCCTCCTCCTTTGTCATTCCCTCAACTTCTTAATCATAACCATAATCTTAATCATAACCTTAATCATAACCTTAATCACCTCCATGTTCTTGATGGCTCTACAACTACTACTACACCTTCTTCTATTTCTAACATAAACACAAACTCAACCCCTTTTCAATCTCAAGCTTTGATGAGGTCAAGATTCTTGTCTAGATTTCCTGCAAAAAGAAGCATGAGAGCTCCAAGGATGCGTTGGACTACTACACTTCATGCTCGATTCGTTCATGCTGTTGAACTCTTAGGTGGCCATGAAAGGGCAACTCCAAAATCAGTTCTTGAGCTAATGGATGTGAAGGATCTAACATTAGCACATGTTAAGTCACATTTACAGATGTATCGGACGGTGAAGACTACAGATAGAGTAGGGGCTTCATCAGGGCAATCGGATGTATACGATAATGGATCGTCTGGAGATAATTCTGATGATATAATGTTTGACATCAATTCTTCAAGAAGATCATCTGATTTATCCATTAAGCAGCAAGGAAGATCAAGTGTTAATCAAGATAAGGAATGTTATGGTCTTTGGAGCAACTCATCCCGGGAAGGTTGGTTACATGGTAAACCAAAGGTTGATTCTATTGGAAACATGCAATCTCTTGAGAAGGAAATGGACCCAAAGTGTTTAAGCTATGAGAGAATATCAGATGGAAGTTCATCTACAAACCTATCAGGATCAAGCCCAAAGAAACCTAATTTGGATTTGGAATTCACCTTAGGCCAGCCTCTTTGA 1248 0.379 MELFPAQPDLSLQISPPNTKPTSSNWKRTTTEEEMDLGFWKRALDSRNSLSSSSSSMATTTTSTKTHDNYTFDLSLSNPTKPLDSNNTPSNNLIHHHHFQNNGNNNNNAIANPFQSFQQNHYFQHPQPFFQHHHPQNQSLSQELGFLRPIRGIPVYQNPPPLSFPQLLNHNHNLNHNLNHNLNHLHVLDGSTTTTTPSSISNINTNSTPFQSQALMRSRFLSRFPAKRSMRAPRMRWTTTLHARFVHAVELLGGHERATPKSVLELMDVKDLTLAHVKSHLQMYRTVKTTDRVGASSGQSDVYDNGSSGDNSDDIMFDINSSRRSSDLSIKQQGRSSVNQDKECYGLWSNSSREGWLHGKPKVDSIGNMQSLEKEMDPKCLSYERISDGSSSTNLSGSSPKKPNLDLEFTLGQPL 415
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05882 415 PANTHER TRANSCRIPTION FACTOR KAN2-RELATED 8 414 IPR044847 GO:0000976|GO:0006355|GO:0010158
Vifa1g05882 415 SUPERFAMILY Homeodomain-like 230 286 IPR009057 -
Vifa1g05882 415 NCBIfam myb-like DNA-binding domain, SHAQKYF class 233 286 IPR006447 GO:0003677
Vifa1g05882 415 MobiDBLite consensus disorder prediction 291 318 - -
Vifa1g05882 415 MobiDBLite consensus disorder prediction 11 26 - -
Vifa1g05882 415 Pfam Myb-like DNA-binding domain 234 285 IPR001005 -
Vifa1g05882 415 MobiDBLite consensus disorder prediction 377 415 - -
Vifa1g05882 415 FunFam Myb family transcription factor 231 289 - -
Vifa1g05882 415 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g05882 415 MobiDBLite consensus disorder prediction 385 403 - -
Vifa1g05882 415 Gene3D - 232 289 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05882 Vifa-Chr1 921401852 921406617 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05882 1 414 G2-like Transcription Factor Family AT4G17695 37.767 1.44e-56 187
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g05882 Myb_DNA-binding 2.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05882 - - psat:127119781 669.463