Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05878 ATGTTATCCAAATGTGAACCTATTGCTTCTCCATTGGACAAATGTAATCAAATTTCAAGTGATGTTGTTGATGGATTTGTTTTTGTGCTGCTTAAGGTTATTGGAGCTGCGAGGATTGCAGAGGAGTATCCAGAACGAGTTGGACAACCGTTGTGCCAGTATTACATAAGGACGGGATCGTGCAAATTTGGTGCTTCATGCAAGTATCACCATCCTAAACAAACAGTAGGAGTTATTGCCCCCGTGTCGCTAAACCATTATGGATATCCGTTGCGAGTGGGTGAGAAAGACTGTACCTACTATGTGAAAACAGGATAA 318 0.4182 MLSKCEPIASPLDKCNQISSDVVDGFVFVLLKVIGAARIAEEYPERVGQPLCQYYIRTGSCKFGASCKYHHPKQTVGVIAPVSLNHYGYPLRVGEKDCTYYVKTG 105
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05878 105 Gene3D - 38 105 - -
Vifa1g05878 105 ProSiteProfiles Zinc finger C3H1-type profile. 46 74 IPR000571 GO:0046872
Vifa1g05878 105 PANTHER PROTEIN PHOSPHATASE RELATED 36 105 - -
Vifa1g05878 105 SMART c3hfinal6 46 73 IPR000571 GO:0046872
Vifa1g05878 105 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 49 73 IPR000571 GO:0046872
Vifa1g05878 105 SUPERFAMILY CCCH zinc finger 48 74 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05878 Vifa-Chr1 920878016 920879218 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05878 43 81 C2H2 Transcription Factor Family AT5G18550 53.846 2.68e-08 48.1
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vifa1g05878 zf-CCCH 2.6e-09 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05878 - - mtr:11409008 137.502