Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05863 ATGGCAAGACCATCTGAAGTGGTGAAAGACATCAATGATACAGAAGAACTTTGGAACATATCAGTTAGAAAGGGCTCTAGTCAAACAAGTTCCTATGTTGCAAATGGAATTAGCAACAACTGGGAGTTATCGCGAAAAGAACTCAGCTGGATCGGTCAACGGAACAAAAGTTGTGGATTTTTTGATTCTTTGTTAGCTGTTGTTTGCTTCGGAATACTTGCTAAAGTGAGTGATGAATTGTTTGGAGCAACTGGTTGTACATTTGCTGCATCACAACAAGAAGTATTTTTTATAGAAATTTCACAGCTTGTACAAAGTGCTCTTGATGGTTATATGGTTTGCATGTTCGCGTACGATCAGACCGCTTCGGGGAAAACCTTTACAATGATGGGCAGGCCTGGACATCCCGGTGAAAAGGGCTTCATAGCTGTGAATTATCCGGTCAAACATACCGTGAATGCAAGAAGTTTGCCAAAGGGAAAAAGTTTGGTATCAAGTTAA 501 0.4052 MARPSEVVKDINDTEELWNISVRKGSSQTSSYVANGISNNWELSRKELSWIGQRNKSCGFFDSLLAVVCFGILAKVSDELFGATGCTFAASQQEVFFIEISQLVQSALDGYMVCMFAYDQTASGKTFTMMGRPGHPGEKGFIAVNYPVKHTVNARSLPKGKSLVSS 166
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05863 166 PANTHER KINESIN-LIKE PROTEIN KLP-3 89 146 IPR027640 GO:0003777|GO:0007018
Vifa1g05863 166 Pfam Microtubule binding 90 134 IPR031852 GO:0008017
Vifa1g05863 166 ProSiteProfiles Kinesin motor domain profile. 90 166 IPR001752 GO:0003777|GO:0005524|GO:0007018|GO:0008017
Vifa1g05863 166 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 89 143 IPR027417 -
Vifa1g05863 166 Gene3D Kinesin motor domain 76 151 IPR036961 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05863 Vifa-Chr1 918653899 918670590 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05863 90 137 Calmodulin-binding Proteins AT5G65930 58.333 3.58e-11 58.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05863 K10405 - gmx:100801196 90.1225