Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05862 ATGGACATTTCCAAGAAATGTGCATGTGCATGTGCATGCTGCCAACATCGAAGATTTAGGTGTTCTCCAAATTGCCCTTTCGCTCCTTATTTTCCGGCCGATAAACCAAAAATGTTCGCCAATGCTCATAGGTTGTTCGGCTTTTCAAGAATGTTGAAGACTCTAGAGACGATTAGTGATGAAGACGAAAAAGATGATGCAATGAATTCAATAATTTTTGAGTCGGATATTCGTGCTAAATTCCCGGTTCATGGATGTCTCGGTGTTATTAACGAGTATCAAAGTATGATACAGAATTTTGCAGAAGAGCTGGATCGAGTAAAAAAGGTACTAAGTTTGTGTAAGCTATTTCAACAACATAATCTCTTACCTGATTTTTCCATGGATCATTCTTCTGTACCTTCTACTAGTTCTCAAACTCCAATGTTTAACAATCTTGGTGATATCATTCCTCATGATGTTAACGGTACTAAAGTTCTTGAATATGTTAGGGTTATTATGGAGTATCAAGATATGATAAAGAAGTGTGAGGAAGAGTTAGATTATGTCAAAAAGTTAGTAACTTTTTGTAGGCAAAGTCACTCTTTACAGAAAGGATCATCTTAA 606 0.3614 MDISKKCACACACCQHRRFRCSPNCPFAPYFPADKPKMFANAHRLFGFSRMLKTLETISDEDEKDDAMNSIIFESDIRAKFPVHGCLGVINEYQSMIQNFAEELDRVKKVLSLCKLFQQHNLLPDFSMDHSSVPSTSSQTPMFNNLGDIIPHDVNGTKVLEYVRVIMEYQDMIKKCEEELDYVKKLVTFCRQSHSLQKGSS 201
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05862 201 Coils Coil 90 110 - -
Vifa1g05862 201 Pfam Lateral organ boundaries (LOB) domain 10 108 IPR004883 -
Vifa1g05862 201 Coils Coil 166 186 - -
Vifa1g05862 201 ProSiteProfiles LOB domain profile. 9 111 IPR004883 -
Vifa1g05862 201 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 10 120 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05862 Vifa-Chr1 918052399 918053004 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05862 1 115 AS2 family AT3G47870 48.696 9.33e-34 120
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vifa1g05862 LOB 1.3e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05862 - - tpra:123910299 173.711