Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05860 ATGAGTTTTCAAGACATAGAATCCGGCCGCCGCAACCTAATCAACGGCAAACAGAACCCGACGCAGGCGGTTGCTTCCGGCGTATTTCAGATCAACACCGCCGTCTCCACTTTTCAGAGACTCGTTAACACACTCGGAACCCCCAAAGACACGCCAGAACTCCGCGAGAAGCTGCACAAGACGAGACTTCATATTGGACAATTGGTGAAGGATACGTCGGATAAACTTAAACAAGCTAGTGAAATTGATCATCATGCTGATGTTAATGCAACCAAGAAGATAGCAGATGCTAAATTAGCCAAAGATTTTCAGACAGTGTTGAAAGAATTTCAGAAGGCACAGCGTCTTGCTTCCGAGAGGGAGACAGCTTACACTCCTTTTGTTCCGCAAGATGCTCAGCCATCCAGCTATACAGTCAGTGGAGTAGGTGTTAGTTCTGATAAAAGTCAAGAGCAGCGTTCCCTTCTTGTGGAATCTAAAAGACAGGAGGTAATATCCTTGGATAATGAGATTTCCTTTAATGAGGCTATCATCGAGGAAAGAGAACAAGGCATTCAAGAAGTTCAACAGCAGATTGGGGAAGTAAATGAGATCTTCAAAGATCTTGCTGTGCTTGTTCATGAGCAAGGGGCAATGATTGATGATATTGGATCCAACATTGAGCATTCCCATGAAGCCACTGCCCAAGCAAAATCAGAACTTGTGAAAGCTTCTAAGACACAACGATCAAGTTCATCTTTGGTGTGCTTGCTTTTGGTGATATTTGGGATCGTGCTTCTCATCATCATCATTGTTGTGGCTGCTTAG 807 0.4424 MSFQDIESGRRNLINGKQNPTQAVASGVFQINTAVSTFQRLVNTLGTPKDTPELREKLHKTRLHIGQLVKDTSDKLKQASEIDHHADVNATKKIADAKLAKDFQTVLKEFQKAQRLASERETAYTPFVPQDAQPSSYTVSGVGVSSDKSQEQRSLLVESKRQEVISLDNEISFNEAIIEEREQGIQEVQQQIGEVNEIFKDLAVLVHEQGAMIDDIGSNIEHSHEATAQAKSELVKASKTQRSSSSLVCLLLVIFGIVLLIIIIVVAA 268
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05860 268 FunFam Syntaxin-22 like 15 128 - -
Vifa1g05860 268 SMART tSNARE_6 170 237 IPR000727 -
Vifa1g05860 268 PANTHER SYNTAXIN 21 260 IPR045242 -
Vifa1g05860 268 Gene3D - 168 268 - -
Vifa1g05860 268 ProSiteProfiles t-SNARE coiled-coil homology domain profile. 175 237 IPR000727 -
Vifa1g05860 268 ProSitePatterns Syntaxin / epimorphin family signature. 181 220 IPR006012 GO:0005484|GO:0006886|GO:0016020
Vifa1g05860 268 Gene3D - 15 128 - -
Vifa1g05860 268 Pfam SNARE domain 212 263 IPR000727 -
Vifa1g05860 268 Pfam Syntaxin-like protein 25 124 IPR006011 GO:0016020
Vifa1g05860 268 SUPERFAMILY t-snare proteins 17 230 IPR010989 GO:0016020|GO:0016192
Vifa1g05860 268 SMART SynN_4 8 122 IPR006011 GO:0016020
Vifa1g05860 268 CDD SNARE_Qa 178 236 - -
Vifa1g05860 268 FunFam Syntaxin-22 like 168 268 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05860 Vifa-Chr1 917991779 917994519 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05860 1 256 SNARE and Associated Proteins AT5G46860 74.615 4.48e-139 390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05860 - - gmx:100810149 380.948
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05860 1 917991779 917994519 Vifa1g05860 1 917991779 917994519 ECH
Vifa1g05860 1 917991779 917994519 Vifa4g01869 4 526724120 526727586 PCT