Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05858 ATGGACGGAGCCAGCGGCGTCAGTAGCGGCGGAGAAGTCTCATCCCAATTACCGGCGCCGACACCGATGCAAAACTCAAACTCGCCGCCTCCGTTTTTGAGCAAGGACTTTTTGTTGTTTGGGACCCACCGGAATTCGCTAGGGACCTTTTGCCGAAGTACTTCAAAACACAACAACTTCTCAAGCTTTGTTAGACAGTTGAATACATATGGTTTCAGGAAGGTCGACCCAGATCGCTGGGAATTTGCAAATGAGGCGCCTTCAGGGAATGGAGCAACGACAACAGCAAATGATGTCATTCCTTGCCAAAGCTGTCCAGAGTCCCTGGCTTCTTTGCTCAGTTTGTGCAACAGCAAAAATGACAGCAATAGGCGCATAACTGAAGTCAACAAAAAGCGTAGGCTCAAACAGGAAGGTATTGCTGAAACAACAGAGCGAGCTGCCCCTTCTGACGGACAAATTATTAAATATCAACCTCAGATGAATGAAACAGCAAAAGCAATGCTAAGGAAGATCATGAAATGGGGATACTCCCCCTGCAGTCTTCTCACATTCCAGCTGCAACAGGAGCTCAAGGGACACATACCTTCGGCAGATGTACCTCAAGCTAGAGCACCTGAAAATGTTAGGTTGGATGGAGCACATACAACACCGACTATCCCGAATTCTCAAGCAGATGTTATCATGCCTGATATACCTTCAATACCAGAGATTGTGCCAAGAAGTATTCTCGATATTCCCGAAGACAATTATATGGCTCCTGAGACAGATGATGGATTTATGGATACAACTTCACTTGGGATCTTGAGGACCAACAGTGACGAAACATCCAGAGGGAATGAACTGCAGCCAACAGAAAATGGATGGGACAATACTCAACGCCTGGATCAACTAACAGAGCAGATGGGTCTTCTTTCTTCTGAGGCCAAAAGATTATAA 939 0.4622 MDGASGVSSGGEVSSQLPAPTPMQNSNSPPPFLSKDFLLFGTHRNSLGTFCRSTSKHNNFSSFVRQLNTYGFRKVDPDRWEFANEAPSGNGATTTANDVIPCQSCPESLASLLSLCNSKNDSNRRITEVNKKRRLKQEGIAETTERAAPSDGQIIKYQPQMNETAKAMLRKIMKWGYSPCSLLTFQLQQELKGHIPSADVPQARAPENVRLDGAHTTPTIPNSQADVIMPDIPSIPEIVPRSILDIPEDNYMAPETDDGFMDTTSLGILRTNSDETSRGNELQPTENGWDNTQRLDQLTEQMGLLSSEAKRL 312
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05858 312 PRINTS Heat shock factor (HSF) domain signature 63 75 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g05858 312 PRINTS Heat shock factor (HSF) domain signature 50 62 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g05858 312 MobiDBLite consensus disorder prediction 8 30 - -
Vifa1g05858 312 Coils Coil 295 312 - -
Vifa1g05858 312 Gene3D - 36 87 IPR036388 -
Vifa1g05858 312 Pfam HSF-type DNA-binding 52 85 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g05858 312 SUPERFAMILY "Winged helix" DNA-binding domain 54 85 IPR036390 -
Vifa1g05858 312 SMART hsfneu3 28 86 IPR000232 GO:0003700|GO:0006355|GO:0043565
Vifa1g05858 312 PANTHER HEAT SHOCK TRANSCRIPTION FACTOR 55 86 IPR027725 -
Vifa1g05858 312 MobiDBLite consensus disorder prediction 1 30 - -
Vifa1g05858 312 MobiDBLite consensus disorder prediction 271 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05858 Vifa-Chr1 917960865 917964925 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05858 18 86 HSF AT1G32330 51.685 1.34e-18 84.3
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HSF Vifa1g05858 HSF_DNA-bind 1.1e-08 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05858 K09419 - gmx:100794897 200.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05858 1 917960865 917964925 Vifa1g05858 1 917960865 917964925 ECH