Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05855 ATGAACGGGAGACACCACCGCCACAAATCTTCCGCCACCTCAAAGCCGCAACAATACCACCGTGCCAAATCGAATTTCCGCTACGTCAAGAAATCCGAACTTAGTTCTTCATCCAGCTCTCTCGCGGTTGAAGAAAGAGTTTCCCCTGAAGATGTTGATGTCAACGGCAATAGCAGTAACAGTAACAACACTGCCGGTGACGTGGCTAGCTCAAGCACGACGAAAGAAGGCGGTGATGACCATGATATTGATCTTATTATCGATAATAGGCTTGATAAGTTGCTAAGTGATATTCAACAACCTGAGTTGTCCATTGAAGAGATCACAATCAATGATCAATTGCAGCAAGATGAGTTACTTGTGGTGGAGTCAATTTATGGAGAAAATGTTTTCAGCCTTGATACATGGAAAGGCTTGCGTTGTTTTCAGATACACATAAACATTCATACTTTGGATGAAATAGGCATTACTGCTAAGATGAACTCTGTGAGTGAAGTTGAAACTATAAGCAGCAATTCAGATGACTTTTTATACTCTTTCAAAGTTCAATACCTTCCACCGATTGTTTTGACGTGTTTATTACCTAAGTCAACAGCAAGGGCAGGAAGTGATTTACCATTGGACTCACGCGTGGTTTCCGGAATTGGATGCATTGATGCTGATATTCCTTTTTTACAAAGCTACAATAATGAGAGACGCCATCAGAACTTCCTTAAGGAATTGCATGAATGTTGCATTTGCTATAGTGAATATCCAGGTACCGAATTCGTCCAATTACCATGTAAACATTTTTTTTGCCGCAAATGCGTGCAGACCTTTACCCAAATTCACGTAAAAGAAGGGAACATTAGTAATCTTCAATGTCTGGATGCAAAATGCAAGGACATGATTCCACCTAGCCTTTTAAAACGTTTTCTTGGCGACGAAGATTACAAACGTTGGGAATCAGTGATGTTAGAGAAAACACTTGCATCGATGTCCGATGTTGTTTATTGTTCGAGATGCGAAACACCTTGTATCGAGGACGAAGACCAACATGCTCAGTGCCCAAAATGCTTTTTTAGCTTTTGTACTCTTTGTAGAGAACGACGCCATGTTGGCATAGAATGCATGACACTAGATATGAAGCTTCAGCTTCTGCAGGATCGGCAAAATTCATCCCAATTAAAGGGAAATCAAAGGCGTCTTGAACTTGAAAAAATCAATGAAATGCTCAGTGAGAGAGAAATTCGCCGTGATTCCAAGTTTTGCCCGTCTTGTGACATGGCGATTTCTCGAACTGAAGGTTGTAATAAAATGAAGTGCGGTAATTGTGAACAATACTTCTGCTACCGCTGCAACCAAGCACTTGATGCATCAGATCCATATGGACATTTCAGGGACGGGTCGTGTGAACTGTTCCCACGAGAAATGATTGATAACTGGCAAGTACAAGCACGTGTAAATCCTCTCCAGGAAATACAACAAGTGCATGCTGAACTCTTTCACCTCGGTGGCTCAGCATGTCCTAGTTGTCGTCAATTTAATGTAAAGATTGGAAACAATAATCACATGTTATGTTGGGCATGCCAAAGCCATTACTGCTACTTATGCAACGGAGTTGTCAGGCGCGGCACAAAGCATTATGGACCGAAAGGTTGCAAACAGCACAGTGAGGGATAG 1662 0.4182 MNGRHHRHKSSATSKPQQYHRAKSNFRYVKKSELSSSSSSLAVEERVSPEDVDVNGNSSNSNNTAGDVASSSTTKEGGDDHDIDLIIDNRLDKLLSDIQQPELSIEEITINDQLQQDELLVVESIYGENVFSLDTWKGLRCFQIHINIHTLDEIGITAKMNSVSEVETISSNSDDFLYSFKVQYLPPIVLTCLLPKSTARAGSDLPLDSRVVSGIGCIDADIPFLQSYNNERRHQNFLKELHECCICYSEYPGTEFVQLPCKHFFCRKCVQTFTQIHVKEGNISNLQCLDAKCKDMIPPSLLKRFLGDEDYKRWESVMLEKTLASMSDVVYCSRCETPCIEDEDQHAQCPKCFFSFCTLCRERRHVGIECMTLDMKLQLLQDRQNSSQLKGNQRRLELEKINEMLSEREIRRDSKFCPSCDMAISRTEGCNKMKCGNCEQYFCYRCNQALDASDPYGHFRDGSCELFPREMIDNWQVQARVNPLQEIQQVHAELFHLGGSACPSCRQFNVKIGNNNHMLCWACQSHYCYLCNGVVRRGTKHYGPKGCKQHSEG 553
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05855 553 CDD Rcat_RBR_RNF14 402 467 IPR047548 GO:0008270
Vifa1g05855 553 CDD BRcat_RBR_RNF14 323 374 - -
Vifa1g05855 553 Gene3D - 388 497 - -
Vifa1g05855 553 SUPERFAMILY RING/U-box 404 459 - -
Vifa1g05855 553 SUPERFAMILY RING/U-box 313 375 - -
Vifa1g05855 553 ProSitePatterns Zinc finger RING-type signature. 261 270 IPR017907 -
Vifa1g05855 553 MobiDBLite consensus disorder prediction 1 81 - -
Vifa1g05855 553 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 239 328 IPR013083 -
Vifa1g05855 553 SMART ibrneu5 399 464 IPR002867 GO:0008270
Vifa1g05855 553 SMART ibrneu5 312 370 IPR002867 GO:0008270
Vifa1g05855 553 SUPERFAMILY RING/U-box 489 550 - -
Vifa1g05855 553 Pfam IBR domain, a half RING-finger domain 400 449 IPR002867 GO:0008270
Vifa1g05855 553 Pfam IBR domain, a half RING-finger domain 312 370 IPR002867 GO:0008270
Vifa1g05855 553 MobiDBLite consensus disorder prediction 29 44 - -
Vifa1g05855 553 FunFam RBR-type E3 ubiquitin transferase 385 496 - -
Vifa1g05855 553 SMART ring_2 502 531 IPR001841 -
Vifa1g05855 553 SMART ring_2 332 420 IPR001841 -
Vifa1g05855 553 SMART ring_2 244 291 IPR001841 -
Vifa1g05855 553 FunFam RBR-type E3 ubiquitin transferase 239 323 - -
Vifa1g05855 553 CDD RING-HC_ITT1-like 238 297 - -
Vifa1g05855 553 Gene3D Ubiquitin Conjugating Enzyme 104 197 IPR016135 -
Vifa1g05855 553 ProSiteProfiles Zinc finger RING-type profile. 244 288 IPR001841 -
Vifa1g05855 553 SUPERFAMILY RING/U-box 239 323 - -
Vifa1g05855 553 PANTHER UBIQUITIN CONJUGATING ENZYME 7 INTERACTING PROTEIN-RELATED 233 451 - -
Vifa1g05855 553 MobiDBLite consensus disorder prediction 52 73 - -
Vifa1g05855 553 ProSiteProfiles TRIAD supradomain profile. 240 470 IPR044066 -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05855 239 472 ARIADNE family AT3G27710 22.822 8.57e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05855 K11971 - gmx:100500662 716.072
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05855 1 917742254 917746655 Vifa1g05855 1 917742254 917746655 ECH