Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05849 ATGGAATCTAACCAGGAAGGTGATGAGAGAAAAAAAGAACACAAAGTTCCTTTCTTAAAGCTGTTTTCTTTTGCTGACTCTTATGATTATGTTTTAATGTTTATTGGATCTATTGGAGCATGTGTTCATGGTGCTTCTATTCCTGTTTTCTTCATCTTCTTTGGAAAGTTGATCAATGTTATTGGTTTGGCTTATCTTTTTCCTAAGGAAGCTTCTCACCAAGTTGCCAAGTACTCGTTGGATTTTGTGTATCTAAGTGTAGTAATATTGTTTTCATCTTGGACAGAGGTGGCTTGTTGGATGCATACTGGAGAAAGACAAGCAGCAAAAATGAGAATGGCTTATTTAAAATCGATGTTAAATCAAGATATAAGTTTATTTGATACTGAGGCTTCAACTGGAGAAGTTATTTCAGCAATTACTAGTGATATTATTATTGTTCAAGATGCTTTATCTGAGAAGGTAGGAAACTTCTTGCACTACATAAGCCGATTCATAGCTGGGTTTACAATTGGCTTTGTAAGAGTATGGCAGATTAGTCTAGTCACACTTTCAATTGTTCCCTTAATTGCTCTTGCTGGAGGACTTTATGCATATGTCACAATTGGCCTCATTGCAAAAGTTAGAAAAGCATATGTTAGAGCTGGTGAAATTGCTGAAGAGGTGATAGGAAATGTTAGAACTGTACAAGCTTTTGCAGGAGAAGAAAGAGCTGTGAAATCTTATAAAGCTGCTCTTATGAAAACTTATGTAAATGGTAGAAAAGCTGGTTTGGCTAAAGGTCTTGGACTTGGTTCAATGCATTGTGTTCTTTTTCTATCTTGGTCTTTGCTTGTTTGGTTCACTAGCATTATTGTTCACAAGAATATCGCCAATGGCGGCGAGTCCTTTACTACCATGCTTAATGTCGTTATCTCCGGCCTGTCACTTGGACAGGCGGCACCGGACATCTCAGCGTTTATCCGAGCTAAGGCTGCTGCTTATCCGATTTTCAAGATGATAGAAAGGGACACAGTGAGCAAACAAAGCTTGAAAACTGGTCGAAAATTAAACAAAGTGGAGGGACATATCCAGTTTAAGAATGTATGTTTCAGTTATCCGTCTCGTCCGGACGTAGCGATCTTCAACAACTTCAATCTCGACATTCCTGCAGGAAAAATTGTTGCACTTGTCGGAGGAAGTGGTTCTGGAAAGAGCACTGTTGTATCGTTGATAGAGCGTTTTTACGAACCTCTTTCCGGTCATATACTTTTGGACAAGAATGAAATCAGAGAACTAGATCTCAAGTGGCTTAGGCAACAAATTGGACTAGTTAATCAAGAGCCTGCACTTTTTGCAACAAGCATCAAGGAGAATATTTTGTATGGAAAAGATGATGCTACTCTTGAAGAACTAAAACGTGCCGTGAAGCTTTCAGATGCTCAATCTTTCATCAATAATCTTCCGGAACGATTAGACACTCGGGTTGGTGAGAGAGGGATACAACTATCAGGTGGGCAGAAGCAAAGGATTGCGATATCTCGTGCCATTGTGAAGAATCCATCTATCCTTTTACTAGATGAGGCAACTAGTGCTCTTGATGCTGAGTCTGAGAAAAGTGTACAAGAGGCGCTCGATCGTGTCATGGTTGGAAGAACAACCATTGTGGTTGCACACAGACTTTCTACAATTAGGAATGCCGATGTTATAGCTGTTGTACAAGGAGGGAAAATTGTGGAGACTGGTAACCATGAAGAACTCATGTCTAACCCAACTAGTGTTTATTCATCTCTTGTTCAACTCCAAGGTGCATCTTCTTTGCAAGGGCTTCCCTCGGTTGGTCCTAGCTTAGGACGCCAATCAAGTGTGGGCTACTCAAAAGAATTTTCGCGTGCGACAACAAGCATTGGTGGTAGTTTTCGATCGGACAAAGACTCAATTGGCCATATCGGTGGTGGTGATGATGAAAGCAAGTCTAAGCATGTTTCAGCAAAAAGGCTATATTCTATGGTTGGTCCTGACTGGCCTTATGGAGTTTTTGGGACCTTATGTGCATTTGTTGCTGGAGCACAAATGCCACTTTTTGCACTTGGAATCTCTCATGCTCTTGTTTCATATTATATGGATTGGGATACAACGCGTCGTGAAGTTAAAAAAATTGCTTTCCTCTTCTGTGGAGGTGCAGTCATAACTGTCATAGTTCATGCCATTGAGCATCTCTTTTTCGGTATCATGGGCGAGCGACTTACTCTTCGTGTGCGAGAAAATATGTTTAGCGCTATTTTGAAGAATGAAATTGGATGGTTTGACGAAACAGGCAACACAAGCTCTATGCTTTCATCGCGATTAGAATCCGACGCAACTTTAATGCGAACAATAGTTGTTGATCGATCAACAATTCTGTTACAAAATGTTGGTCTGGTTGTTGCTTCTTTTATCATTGCCTTCCTATTGAACTGGAGAATCACACTTGTTGTCTTGGCCACATATCCTTTGATAGTTAGTGGTCACATTAGTGAGAAACTTTTCATGAAAGGCTATGGTGGCAACTTGAGCAAAGCATATCTAAAAGCCAACATGCTTGCTGGTGAGGCGGTGAGCAATATGCGCACAGTAGCCGCATTTTGCTCTGAAGAAAAGATCCTTGATCTTTATGCTAACGAGCTCGTCGGTCCTTCCAAAAACTCATTTCGACGCGGTCAAATTGCCGGCATATTCTATGGCATTTCCCAGTTCTTCATCTTCTCATCTTATGGCCTTGCCTTATGGTATGGATCTGTTTTGATGGGAAAGGAGCTAGCTAGCTTTAAATCTGTTATGAAGTCATTTATGGTTTTAATCGTAACAGCGCTTGCCATGGGGGAAACTTTGGCACTAGCACCGGATCTTTTGAAAGGGAACCAAATGGTTGCATCAGTTTTTGAAGTAATGGATAGAAAAACAGAAATAAGAGGTGATACCGGAGAAGAGTTAAGGACAGTGGAAGGAACAATTGAGCTCAAAAGAATCAATTTCAGCTACCCTTCAAGACCAGATGTGATTATTTTCAAGGATTTCAATCTAAGAGTCCCTTCAGGAAAAAGTGTTGCTTTAGTAGGACAAAGTGGTTCTGGTAAAAGCTCAGTGATCTCTATCATACTCAGATTTTACGATCCATCTTCAGGAAAGGTGTTGATTGATGGTAAAGATATCACAAGAATAAATCTAAAATCACTTCGAAAACACATTGGCTTAGTGCAACAAGAACCAGCCCTTTTCGCCACATCAATTTACGAAAACATTCTCTACGGAAAAGAAGGCGCATCTGATTCAGAAGTAATCGAAGCGGCTAAGCTAGCAAATGCTCATACCTTCATAAGTGGACTTCCAGAGGGTTACTCAACCAAAGTTGGTGAAAGAGGTGTTCAACTTTCCGGTGGACAAAGACAAAGAGTAGCCATAGCTAGAGCTGTTCTAAAGAATCCTGAAATCTTGCTACTTGATGAAGCAACTAGTGCACTCGACGTCGAATCCGAGCGAATAGTACAACAGGCTCTTGACAGATTAATGCAGAACAGAACAACTGTTATGGTGGCACATAGATTGTCCACTATAAGAAATGCAGATCAAATCTCGGTTTTGCAAGATGGGAAGATTATTGAGCAAGGAACACATTCAAGTCTTATAGAGAATAAAAGTGGACCATATTATAAATTAGTCAATCTTCAACAGCAACAGCAACATCAATCCTAA 3711 0.4034 MESNQEGDERKKEHKVPFLKLFSFADSYDYVLMFIGSIGACVHGASIPVFFIFFGKLINVIGLAYLFPKEASHQVAKYSLDFVYLSVVILFSSWTEVACWMHTGERQAAKMRMAYLKSMLNQDISLFDTEASTGEVISAITSDIIIVQDALSEKVGNFLHYISRFIAGFTIGFVRVWQISLVTLSIVPLIALAGGLYAYVTIGLIAKVRKAYVRAGEIAEEVIGNVRTVQAFAGEERAVKSYKAALMKTYVNGRKAGLAKGLGLGSMHCVLFLSWSLLVWFTSIIVHKNIANGGESFTTMLNVVISGLSLGQAAPDISAFIRAKAAAYPIFKMIERDTVSKQSLKTGRKLNKVEGHIQFKNVCFSYPSRPDVAIFNNFNLDIPAGKIVALVGGSGSGKSTVVSLIERFYEPLSGHILLDKNEIRELDLKWLRQQIGLVNQEPALFATSIKENILYGKDDATLEELKRAVKLSDAQSFINNLPERLDTRVGERGIQLSGGQKQRIAISRAIVKNPSILLLDEATSALDAESEKSVQEALDRVMVGRTTIVVAHRLSTIRNADVIAVVQGGKIVETGNHEELMSNPTSVYSSLVQLQGASSLQGLPSVGPSLGRQSSVGYSKEFSRATTSIGGSFRSDKDSIGHIGGGDDESKSKHVSAKRLYSMVGPDWPYGVFGTLCAFVAGAQMPLFALGISHALVSYYMDWDTTRREVKKIAFLFCGGAVITVIVHAIEHLFFGIMGERLTLRVRENMFSAILKNEIGWFDETGNTSSMLSSRLESDATLMRTIVVDRSTILLQNVGLVVASFIIAFLLNWRITLVVLATYPLIVSGHISEKLFMKGYGGNLSKAYLKANMLAGEAVSNMRTVAAFCSEEKILDLYANELVGPSKNSFRRGQIAGIFYGISQFFIFSSYGLALWYGSVLMGKELASFKSVMKSFMVLIVTALAMGETLALAPDLLKGNQMVASVFEVMDRKTEIRGDTGEELRTVEGTIELKRINFSYPSRPDVIIFKDFNLRVPSGKSVALVGQSGSGKSSVISIILRFYDPSSGKVLIDGKDITRINLKSLRKHIGLVQQEPALFATSIYENILYGKEGASDSEVIEAAKLANAHTFISGLPEGYSTKVGERGVQLSGGQRQRVAIARAVLKNPEILLLDEATSALDVESERIVQQALDRLMQNRTTVMVAHRLSTIRNADQISVLQDGKIIEQGTHSSLIENKSGPYYKLVNLQQQQQHQS 1236
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05849 1236 Gene3D ABC transporter type 1, transmembrane domain 626 838 IPR036640 GO:0005524|GO:0016020
Vifa1g05849 1236 SUPERFAMILY ABC transporter transmembrane region 653 975 IPR036640 GO:0005524|GO:0016020
Vifa1g05849 1236 PANTHER ABC TRANSPORTER B FAMILY 4 594 IPR039421 -
Vifa1g05849 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 984 1229 IPR027417 -
Vifa1g05849 1236 Gene3D ABC transporter type 1, transmembrane domain 20 346 IPR036640 GO:0005524|GO:0016020
Vifa1g05849 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 357 593 IPR003439 GO:0005524
Vifa1g05849 1236 Gene3D - 347 596 IPR027417 -
Vifa1g05849 1236 Gene3D - 981 1230 IPR027417 -
Vifa1g05849 1236 CDD ABC_6TM_Pgp_ABCB1_D1_like 33 330 - -
Vifa1g05849 1236 FunFam ABC transporter B family member 1 20 356 - -
Vifa1g05849 1236 Pfam ABC transporter transmembrane region 673 944 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05849 1236 Pfam ABC transporter transmembrane region 33 305 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05849 1236 Pfam ABC transporter 1010 1158 IPR003439 GO:0005524
Vifa1g05849 1236 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 350 595 IPR027417 -
Vifa1g05849 1236 CDD ABC_MTABC3_MDL1_MDL2 991 1228 - -
Vifa1g05849 1236 ProSitePatterns ABC transporters family signature. 496 510 IPR017871 GO:0005524|GO:0016887
Vifa1g05849 1236 FunFam ABC transporter B family member 4 347 600 - -
Vifa1g05849 1236 CDD ABC_MTABC3_MDL1_MDL2 357 595 - -
Vifa1g05849 1236 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 991 1227 IPR003439 GO:0005524
Vifa1g05849 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 34 322 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05849 1236 SUPERFAMILY ABC transporter transmembrane region 21 327 IPR036640 GO:0005524|GO:0016020
Vifa1g05849 1236 SMART AAA_5 384 570 IPR003593 GO:0016887
Vifa1g05849 1236 SMART AAA_5 1018 1204 IPR003593 GO:0016887
Vifa1g05849 1236 CDD ABC_6TM_Pgp_ABCB1_D2_like 661 976 - -
Vifa1g05849 1236 ProSitePatterns ABC transporters family signature. 1130 1144 IPR017871 GO:0005524|GO:0016887
Vifa1g05849 1236 FunFam ABC transporter B family member 4 981 1235 - -
Vifa1g05849 1236 Gene3D ABC transporter type 1, transmembrane domain 905 1235 IPR036640 GO:0005524|GO:0016020
Vifa1g05849 1236 FunFam ABC transporter B family member 2 792 988 - -
Vifa1g05849 1236 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 672 958 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05849 1236 Pfam ABC transporter 376 524 IPR003439 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05849 Vifa-Chr1 916047753 916054189 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05849 12 595 Calmodulin-binding Proteins AT2G36910 37.669 6.61e-111 376
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05849 K05658 - gmx:100819045 2132.84