Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05844 ATGGGTAGGTCACCATGTTGTGATGAAATTGGAGTCAAGAAAGGGCCATGGACAGAAGAAGAAGATGAGAAGCTGATTGATTATATCAACAAACATGGCCATGGAAATTGGGGAACACTTTCAAAACGTGCTGGTTTGAATAGGTGTGGGAAGAGTTGTAGGTTAAGGTGGACAAATTATTTGAGACCTGATATTAAAAGAGGAAAATTCACTGATGAAGAAGAAAGAATCATCATCAACCTTCATTCAGTACTCGGAAACAAGTGGTCTAAGATAGCAGCTCATCTTCCGGGACGAACAGATAATGAGATAAAGAATTTTTGGAACACAAACATAAGGAAAAAGCTTTTGAAGATGGGAATCGACCCAGAAACTCATAAGCCAAGAACTGATTATAATCACCTCATGAGTATTTCCAACTTACTTGGAATGTCAAACATAGGCAATACTTTCAGCAACAACCCTGTTGGTTTTCAGCCAGATATTACTCACTTAGCCAAAATGCAACTGTTGCAAAATATGTTACAAATTATGAACACCAATAATTCATTTGCTATGAACCCTTATAGCTCTTTAGGAAATATTATTCCTAATCTTAATCCATTCAATGTGTTTTTGAATGGAGCAAACACAATTCAAACTAAGGAGCCTTTAGGTTTGAATGGCGGGGAAGAATATGCTATTAGTATGAACCCTAATTTATACTCTCATGGAGTAATGAGTGAGTCTTCTAAGCATGATATTTCAAATGGTGGATCAAGTTTACAAAATCTTGATTATAGCCAATTGAGAAGCAATAATCAAGATGAAAATCCACTTCCTGCTTTGGTTGCTTCCTCTCCAAAAACAACTTTCAACCAAATGGAAAGTGATTGTAACAAAGCTCAAATGTCCATTCAATCACCTTCAAACATAATCTTTGATGATTGGGAGAAGTTCATTGATGAATCAAGTGACTCCTACTGGAAAGAGCTTTTAGACTTGACATCCACTTCTCCATCACAAATTTCATGGTAG 1017 0.3638 MGRSPCCDEIGVKKGPWTEEEDEKLIDYINKHGHGNWGTLSKRAGLNRCGKSCRLRWTNYLRPDIKRGKFTDEEERIIINLHSVLGNKWSKIAAHLPGRTDNEIKNFWNTNIRKKLLKMGIDPETHKPRTDYNHLMSISNLLGMSNIGNTFSNNPVGFQPDITHLAKMQLLQNMLQIMNTNNSFAMNPYSSLGNIIPNLNPFNVFLNGANTIQTKEPLGLNGGEEYAISMNPNLYSHGVMSESSKHDISNGGSSLQNLDYSQLRSNNQDENPLPALVASSPKTTFNQMESDCNKAQMSIQSPSNIIFDDWEKFIDESSDSYWKELLDLTSTSPSQISW 338
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05844 338 CDD SANT 69 112 IPR001005 -
Vifa1g05844 338 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 261 - -
Vifa1g05844 338 CDD SANT 16 61 IPR001005 -
Vifa1g05844 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vifa1g05844 338 Gene3D - 13 66 - -
Vifa1g05844 338 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vifa1g05844 338 Gene3D - 69 116 - -
Vifa1g05844 338 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vifa1g05844 338 Pfam Myb-like DNA-binding domain 67 110 IPR001005 -
Vifa1g05844 338 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Vifa1g05844 338 FunFam MYB-related transcription factor 13 66 - -
Vifa1g05844 338 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vifa1g05844 338 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vifa1g05844 338 SMART sant 66 114 IPR001005 -
Vifa1g05844 338 SMART sant 13 63 IPR001005 -
Vifa1g05844 338 FunFam Transcription factor MYB39 69 130 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05844 Vifa-Chr1 915063738 915065156 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05844 1 327 MYB Transcription Factor Family AT5G16770 47.214 5.16e-91 273
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vifa1g05844 Myb_DNA-binding 2.3e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05844 K09422 - gmx:778082 441.81