Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05842 ATGGGGTTTGGGAAAAAGAATGCAATTAAAGCAGGGAGTTTGGATGTTGATAAGTCAAAGGTTGATGTTGTAAAGAAAGAGAGAAGATGGCGGTTTAGATTCAGTTTCATTGGATGTTGCAAATCTTCAACATCAAAAATTGATAGTAACTCAATTTTTTGCAATGCTACTACTAGTACACAAAATGGTGATAATGTCAAGTCAGTTATAATTCAATCAGAGGAAAACAAATCTGTATTTGAAACAGACACAAAGGATTCAAGTGCTCCTGCAGATTCATCTACAACAACTAGTAATGGTGAAAGTATCTCCTCGACTTCGAAATTCAGCGAGGAGTTAAAGTTTGCTTCTTGTTTAAGAAAATTCACATTCAATGGACTTAAGGTAGCAACTAGGAATTTCAGACCGGAGAGTCTTCTAGGTGAGGGAGGGTTTGGTTGTGTTTTCAAAGGTTGGATTGAAGTGAATGGAACTGCGCCAGTGAAACCGGGTACCGGACTTACGGTTGCTGTTAAGATTCTCAATCATAATGGACATCAAGGTCACAAAGAATGGCTTGCTGAATTAAACTATCTCGGCGATCTTGTTCATCCTAATCTTGTTAAATTGATAGGTTTTTGTATAGAAGATGACCAAAGATTATTGGTTTACGAGTTTATGCCGCGAGGAAGTTTGGAGAATCACCTCTTCAGAAGGCCGTTGCCTCTACCTTGGTCAATCAGAATGAAAATTGCGCTTGGTGCTGCAAAAGGTCTTGCTTTTCTCCACGAAGGAGCTCAAAGGCCCGTGATATATCGCGATTTCAAGACATCTAATATTCTATTAGATGCGGAATACAACGCAAAGCTTTCTGACTTTGGACTCGCTAAAGATGCTCCCGAGGGTGAAAAAACACATGTATCAACAAGAGTAATGGGAACGTATGGTTATGCTGCTCCGGAATATGTGATGACCGGACATTTGTCATCGAAAAGTGACGTCTACAGCTTTGGAGTAGTACTTCTCGAAATGCTCACCGGCCGACGATCCATTGACAAGAAAAGACCAAACGGAGAGCACAATCTGGTGGAATGGGCAAGACCTATACTTGGAGACAGGAGGATGTTCTACCGAATAATCGATCCCCGTCTCGAAGGTCACTTCTCAGTTAAAGGAGCACAGCAAGCAGCACAGCTGGCTGCTCAATGCCTTAGCCGCGACCCAAAATCTAGACCTTTGATGAGTGATATTGTTCAAGCTTTAAAGCCTTTGCCAAACCTTAAGGATATGGCTGTATCATCTCATCAGTTCAAGGTCGCGCGAGTTGATCGTACCATGTCCATGCCGAATCCTAAAAACAGTGTTAGAACAGATTTAGCATCTTTACCAAAAAAGGGTCAGCCTGTTAGGACGTTGTCGAGTTCAAATTACGGTAACGGCTCTCCATATCCTCGTTATAGCAAGTCTCCGAAACCTACCTAA 1461 0.4182 MGFGKKNAIKAGSLDVDKSKVDVVKKERRWRFRFSFIGCCKSSTSKIDSNSIFCNATTSTQNGDNVKSVIIQSEENKSVFETDTKDSSAPADSSTTTSNGESISSTSKFSEELKFASCLRKFTFNGLKVATRNFRPESLLGEGGFGCVFKGWIEVNGTAPVKPGTGLTVAVKILNHNGHQGHKEWLAELNYLGDLVHPNLVKLIGFCIEDDQRLLVYEFMPRGSLENHLFRRPLPLPWSIRMKIALGAAKGLAFLHEGAQRPVIYRDFKTSNILLDAEYNAKLSDFGLAKDAPEGEKTHVSTRVMGTYGYAAPEYVMTGHLSSKSDVYSFGVVLLEMLTGRRSIDKKRPNGEHNLVEWARPILGDRRMFYRIIDPRLEGHFSVKGAQQAAQLAAQCLSRDPKSRPLMSDIVQALKPLPNLKDMAVSSHQFKVARVDRTMSMPNPKNSVRTDLASLPKKGQPVRTLSSSNYGNGSPYPRYSKSPKPT 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05842 486 ProSitePatterns Protein kinases ATP-binding region signature. 140 172 IPR017441 GO:0005524
Vifa1g05842 486 Pfam Protein kinase domain 137 412 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05842 486 MobiDBLite consensus disorder prediction 460 476 - -
Vifa1g05842 486 ProSiteProfiles Protein kinase domain profile. 134 420 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05842 486 Gene3D Transferase(Phosphotransferase) domain 1 220 438 - -
Vifa1g05842 486 ProSitePatterns Serine/Threonine protein kinases active-site signature. 263 275 IPR008271 GO:0004672|GO:0006468
Vifa1g05842 486 MobiDBLite consensus disorder prediction 435 486 - -
Vifa1g05842 486 FunFam Probable serine/threonine-protein kinase PBL8 220 434 - -
Vifa1g05842 486 Gene3D Phosphorylase Kinase; domain 1 93 219 - -
Vifa1g05842 486 SUPERFAMILY Protein kinase-like (PK-like) 108 414 IPR011009 -
Vifa1g05842 486 CDD STKc_IRAK 140 417 - -
Vifa1g05842 486 MobiDBLite consensus disorder prediction 80 104 - -
Vifa1g05842 486 FunFam Serine/threonine-protein kinase BIK1 101 219 - -
Vifa1g05842 486 PANTHER OS01G0588500 PROTEIN-RELATED 94 417 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05842 Vifa-Chr1 914791452 914793925 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05842 92 426 Glycoside Hydrolase AT3G07070 52.199 2.18e-114 342
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g05842 Pkinase 1.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05842 - - gmx:100499647 752.281