Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05839 ATGGCTAAAAAGAAACAGATGGAGCCACAACAAACCCCTAAAAACGACACCGTATCAGCCCCTTCCAGCGTTTTCGATGTCCTCTTCGGCAACGCGCCGGAACAGATAACCGGCACCGCCGCTTCTCTATTTTCCGATGACAACCCCTATAAGAGAAAGCCTCCACAACCCGCTCTTATTTCCGACGTTACCGATCACACTCCAAACCCAGAAAACGGCGTCGTAGATGAGAAGAAGCGAAAGAGGAACAGAGAGAAAAGTCCCGTGCTTGATTCAAATTCTGCAATTCAAGTTTCAGAGAAGAAGAAAAAGAAGAAAAGCGGTTTGAACGAGAAGGAAGGTGAAGAGAAAGAGGTTATTTTGGAGGTAGAAGCGATTGGGACGAAGAAGAAGAGGAAGAGGGATGAGGTTGAGAAAGAGTGGGAGGAGAAGAAGTATGGGATTGTTCAGGGAGGAGATAGAGATGAAAGGGAAGGGTTTGAGGAGGAAAAGGTTGGGAGCAAGAGAAAAGTGCGTGATAATCCAGCAGATATTATGGTTTCAAAAGAAGGTTTTGATGACGAAGATAAGCTTTTGAGGACTATTTTTGTTGGGAATTTGCCTCTTAAGGTGAAAAAGAAGACTTTGTTGAAGGAGTTTAAGAATTTTGGTGAGGTTGAATCTGTTAGGATTCGCTCTGTTCCTTTACAAGATACTAAAAAGCCTAGAAAGGGAGCCATCCTTGCGAAGAAGATCAATGAATCGGCTGAAAGTGTCAATGCTTACATTGTTTTCAAAACTGAGGAATCTGCCCAGGCTTCATTGTCCCACAACATGACTATGGTTGAAGGAAACCACATTCGTGTTGACAGAGCATGCCCGCCTCGCAAGAAACTTAAAGGGGATAGTTCTCAACTTTATGATAGTAAGAGAACTGTTTTTGTGGGTAATCTCCCATTTGATGTAAAGGATGAAGAACTTTATCAGCTATTTGGTGGTATACCCAATCTAGAATCAAGTGTAGAAGCTATAAGAGTTGTTCGAGATCCTCATCTTAATGTTGGAAAGGGAATTGCTTATGTGCTATTTAAAACAAGGGAAGCTGCCAATTCCATTGTTAATAAACGATCCTTGAATCTTCGAGATCGAGCATTGAGACTCAGTCGTGCTAACGCAAATGCTGACGCTACTCCATCTAAAAGGCCATACACTCCAGCTGCACAAGCTCATAGTACCCCTGCAAAGAAGTTTTCATCTGCTTCAAAGTCTCCTTCAAGCAGTAAAAACGGGTCAAACAGAAAACCTACTGCATCTTATCAGGGTCTGCGTGCAACCAAATCTGATGTCCACAAGAAAAGTCATGGTGGAGAAAAACCAAAAGAGCGCACAAAGAAAAGACCAACCGTAGCTGCCAGGAAGGCTAAAACAAAAATTCAGCAGGAGGGTGGTACACCCAAACAAGCGGGGTCAAAAGGTACACCAAAACAAGCGGGGTCAAAAGGTACACCAAATCAAGCGGGGTCAAAACGCAAGTTTGATAGCCGTACTCCTGATAGCTCCCGGCGAGTTATGAAAGCTCAAAAGAAGCGGTAG 1572 0.4364 MAKKKQMEPQQTPKNDTVSAPSSVFDVLFGNAPEQITGTAASLFSDDNPYKRKPPQPALISDVTDHTPNPENGVVDEKKRKRNREKSPVLDSNSAIQVSEKKKKKKSGLNEKEGEEKEVILEVEAIGTKKKRKRDEVEKEWEEKKYGIVQGGDRDEREGFEEEKVGSKRKVRDNPADIMVSKEGFDDEDKLLRTIFVGNLPLKVKKKTLLKEFKNFGEVESVRIRSVPLQDTKKPRKGAILAKKINESAESVNAYIVFKTEESAQASLSHNMTMVEGNHIRVDRACPPRKKLKGDSSQLYDSKRTVFVGNLPFDVKDEELYQLFGGIPNLESSVEAIRVVRDPHLNVGKGIAYVLFKTREAANSIVNKRSLNLRDRALRLSRANANADATPSKRPYTPAAQAHSTPAKKFSSASKSPSSSKNGSNRKPTASYQGLRATKSDVHKKSHGGEKPKERTKKRPTVAARKAKTKIQQEGGTPKQAGSKGTPKQAGSKGTPNQAGSKRKFDSRTPDSSRRVMKAQKKR 523
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05839 523 MobiDBLite consensus disorder prediction 473 503 - -
Vifa1g05839 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 195 237 IPR000504 GO:0003723
Vifa1g05839 523 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 306 377 IPR000504 GO:0003723
Vifa1g05839 523 SMART rrm1_1 194 283 IPR000504 GO:0003723
Vifa1g05839 523 SMART rrm1_1 305 381 IPR000504 GO:0003723
Vifa1g05839 523 MobiDBLite consensus disorder prediction 97 120 - -
Vifa1g05839 523 MobiDBLite consensus disorder prediction 71 88 - -
Vifa1g05839 523 PANTHER OS02G0815200 PROTEIN 98 384 - -
Vifa1g05839 523 MobiDBLite consensus disorder prediction 39 120 - -
Vifa1g05839 523 MobiDBLite consensus disorder prediction 1 21 - -
Vifa1g05839 523 SUPERFAMILY RNA-binding domain, RBD 186 294 IPR035979 GO:0003676
Vifa1g05839 523 Gene3D - 293 393 IPR012677 -
Vifa1g05839 523 Gene3D - 189 292 IPR012677 -
Vifa1g05839 523 MobiDBLite consensus disorder prediction 384 523 - -
Vifa1g05839 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 193 287 IPR000504 GO:0003723
Vifa1g05839 523 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 304 385 IPR000504 GO:0003723
Vifa1g05839 523 MobiDBLite consensus disorder prediction 404 436 - -
Vifa1g05839 523 SUPERFAMILY RNA-binding domain, RBD 298 396 IPR035979 GO:0003676
Vifa1g05839 523 CDD RRM1_RBM34 193 283 - -
Vifa1g05839 523 MobiDBLite consensus disorder prediction 438 457 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05839 173 383 Eukaryotic Initiation Factors Gene Family AT1G22760 28.054 2.00e-07 52.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05839 K14837 - gmx:100809622 558.14
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05839 1 914293286 914296717 Vifa1g05839 1 914293286 914296717 ECH