Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05825 ATGGGAAAAATAATGGTAGCAAGTTCTACTATGACTATCTTTATTCTCTTGGTTATTGTCACCATTACTATTCCACGCACTGAGGCTGGAATTGGTGAGTTTGATGATTTTCTTAAAAATCAATCTCAAGAAGCCCATAAACTTGTTCTTGATTCTTATGTTCCAAATCCTGAAGAAATTGCAGATGACCTCAATGTCCATGTTAATTTGTTAATGCAACAAAGAAACAACACAAGGAGGGAATTGGCGCAAAAAGGTAAAAGAAAAAGAGGACCATGTGAAGCAACCAACCCAATTGATAGTTGTTGGAGATGCCAACAAAATTGGGCTCAAAACAGATTCCAGTTAGCCAAATGTGGTAAAGGGTTTGGAAGAAGAGCCACTGGTGGACTTGGAGGCAGAATATATGTAGTAACTGATCCATCAGATAATGATATGGTAAACCCTAAAGTTGGTACCCTTAGACATGCTGTCATCCAAAAGGGTCCATTGTGGATCATTTTCCAACGTAGTATGATCATTAGATTGAACCAAGAATTGATGGTAACATCAGACAAGACAATTGATGGTCGTGGTGCTAATGTTCAAGTTAAAGATGGTGCTGGAATTACAATGCAATTTGTTAACAATGTTATTATTCATGGACTTCGTATGACAAATATTAGATCTAAAAATGGTGGTATGATTAGAGATTCTGTTGATCATGTTGGAATAAGAACAAAAAGTGATGGTGATGCTATTTCCATTTTTGGATCTTCTAATATTTGGATTGATCATCTTTCACTCTCTCAATGTGAAGATGGTCTTGTCGATGTTATTCAAGGTTCTACTGGTGTCACCATCTCAAATTGTCACATGACAAAACATAATGATGTTATGTTATTTGGAGCTAGTGATACATACAATGGTGACAAGATGATGCAAGTAACAGTAGCATTCAACCACTTTGGTCAAGGATTAATTCAAAGAATGCCAAGATGTAGATTTGGATTTGTCCATGTTTTAAACAATGATTACACACATTGGCAAATGTATGCAATTGGTGGAAGTGCAGGACCAACCATTCTTAGTCAAGGAAATCGTTTCATTGCTCCATTCAATACTGCTGCAAAAGAAGTCACACATAGAGATTATGCTGCAAAAGGAGTTTGGCAAAATTGGCAATGGACTTCAGAAATGGATGTGTTCATGAATGGTGCTACATTTACTCCATCTGGTTCACCAATCAATAAATCTCCATTAAAAAAAGCGTTTATGATGAAACCAAGACATGGATCTCAGGCTAGTAGACTAACAAGGCATTCTGGTGCCCTAAATTGTATGGTAGGAAGGCCTTGTTAG 1341 0.3691 MGKIMVASSTMTIFILLVIVTITIPRTEAGIGEFDDFLKNQSQEAHKLVLDSYVPNPEEIADDLNVHVNLLMQQRNNTRRELAQKGKRKRGPCEATNPIDSCWRCQQNWAQNRFQLAKCGKGFGRRATGGLGGRIYVVTDPSDNDMVNPKVGTLRHAVIQKGPLWIIFQRSMIIRLNQELMVTSDKTIDGRGANVQVKDGAGITMQFVNNVIIHGLRMTNIRSKNGGMIRDSVDHVGIRTKSDGDAISIFGSSNIWIDHLSLSQCEDGLVDVIQGSTGVTISNCHMTKHNDVMLFGASDTYNGDKMMQVTVAFNHFGQGLIQRMPRCRFGFVHVLNNDYTHWQMYAIGGSAGPTILSQGNRFIAPFNTAAKEVTHRDYAAKGVWQNWQWTSEMDVFMNGATFTPSGSPINKSPLKKAFMMKPRHGSQASRLTRHSGALNCMVGRPC 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05825 446 Pfam Pectate lyase, N terminus 31 82 IPR007524 GO:0030570
Vifa1g05825 446 Gene3D - 96 439 IPR012334 -
Vifa1g05825 446 SUPERFAMILY Pectin lyase-like 97 437 IPR011050 -
Vifa1g05825 446 PANTHER PECTATE LYASE 18-RELATED 45 444 IPR045032 GO:0030570
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 243 264 IPR018082 -
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 323 342 IPR018082 -
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 345 364 IPR018082 -
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 179 195 IPR018082 -
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 143 168 IPR018082 -
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 119 136 IPR018082 -
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 387 411 IPR018082 -
Vifa1g05825 446 PRINTS Pollen allergen Amb family signature 417 440 IPR018082 -
Vifa1g05825 446 SMART amb_all 171 368 IPR002022 -
Vifa1g05825 446 Pfam Pectate lyase 179 362 IPR002022 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05825 Vifa-Chr1 912099415 912101422 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05825 11 446 Polysaccharide Lyase AT5G15110 54.390 0.0 528
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05825 K01728 - gmx:100785801 672.544
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05825 1 912099415 912101422 Vifa1g05825 1 912099415 912101422 ECH