Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05824 ATGGCTCCTTCTTTTGATATTAATACTCATACTGTTTGTGTTATGGATGCTTCCGGTCAATTGGGGTTTAGTCTTGTTCAAAGACTTCTTCTAAGAGGGTACACCGTTCATGCCTCCATTCAAAAATATGGGGAAGAAGACCTATTCAATGGAGTTTCTGCTGATTCTGATAAACTCAAGATTTTTCGATCAGATCCTTTTGATTATCATAGCATAATTGATGCTCTTAGAGGTTGCTCTGGTTTGTTCTACTCGTTTGAACCTCCTCTTGACCAACCCAATTACGATGAATATATGGCTGACGTGGAAGTTAGAGCAGCACATAACGTGCTTGAAGCTTGTGCACAAACAGAAACCATAGATAAAGTTGTTTTCACATCCTCTGCAACTGCTGTTGTTTGGAGGGAAGATCGTAAAACCATTGAACCTGATTTGGATGAAATTCATTGGAGTGATGTCAATTTCTGTCGTAAATTTAAGTTATGGCATGGGATGTCAAAGACACTATCCGAGAAAACAGCGTTTGCATTAGCAATGGACAGAGGAGTGAACATGGTGTCTATCAATGCAGGATTATTGATGACTCATGATCTTTCAATTAAACATCCTTATTTAAGAGGAGCTGCCGAAATGTACGAAGATGGTGTCTTTGTGACTGTTGATTTAGGTTTCTTGGTGGATACTCACATCTGTGTCTACGAGGATGTTTCATCCTACGGTCGTTACTTATGTTTCAATCATATTATTAATACTCAAGACGACGCCGTTCAGCTCGCTCACAAATTAACGCCTACTGCATCTTCTTCCTTACCCCAAAGCGATGACTATGGAAAGAGATTCATTGAACAGAAAATAAGCAACAAGAAGTTGAACAAATTGATGGTGGACTTTGAAGCTTAA 900 0.3911 MAPSFDINTHTVCVMDASGQLGFSLVQRLLLRGYTVHASIQKYGEEDLFNGVSADSDKLKIFRSDPFDYHSIIDALRGCSGLFYSFEPPLDQPNYDEYMADVEVRAAHNVLEACAQTETIDKVVFTSSATAVVWREDRKTIEPDLDEIHWSDVNFCRKFKLWHGMSKTLSEKTAFALAMDRGVNMVSINAGLLMTHDLSIKHPYLRGAAEMYEDGVFVTVDLGFLVDTHICVYEDVSSYGRYLCFNHIINTQDDAVQLAHKLTPTASSSLPQSDDYGKRFIEQKISNKKLNKLMVDFEA 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05824 299 FunFam Cinnamoyl-CoA reductase-like SNL6 isoform A 4 299 - -
Vifa1g05824 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 5 265 IPR036291 -
Vifa1g05824 299 CDD FR_SDR_e 12 295 - -
Vifa1g05824 299 Pfam 3-beta hydroxysteroid dehydrogenase/isomerase family 14 136 IPR002225 GO:0003854|GO:0006694|GO:0016616
Vifa1g05824 299 Gene3D - 4 299 - -
Vifa1g05824 299 PANTHER NAD DEPENDENT EPIMERASE/DEHYDRATASE 11 290 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05824 Vifa-Chr1 911991357 911993531 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05824 11 297 Monolignol Biosynthesis Gene Families AT5G58490 30.921 1.10e-38 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05824 - - gmx:100790333 555.829
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05824 1 911991357 911993531 Vifa1g05824 1 911991357 911993531 ECH