Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05822 ATGGCTTCTCTTGGAAATCCAAAAGCTTGGGTTCCATATATGAACAACAAAGATTGTTCTCAAGGTTTTTGTAGCTTGTATTGTCCGCAATGGTGTTATGCAATCTACTCTCCACCTCCACCTTCTCCTTTTGAATTCCCTGATGATGATTCAAGTTCAAATTTCTCTCCTCTTGTTATTGCAATCATTGGAATCTTAGCAAGTGCTTTTCTTCTTGTCACTTACTACACCATAATCTCCAAATACTGCGGCCGAAGAGTATCATCGTCACAAAGCGAATCACGCGAAACAAACGAGGAATTAGAAGACAATCATCATCATCATAACCATTCAATCCATGAACCATGGCATCTTACAACAAATGGCTTAGATGAAGCTTTGATTAAATCAATTACAGTTTGCAAGTACAAAAAGAATGATGGATTGGTTGATGTAACAGATTGCTCCGTTTGTCTCAACGAGTTTCAAGACTATGAAAGTATTCGACTTTTACCTAAATGTAGCCATGCTTTTCATCTTCCTTGTATTGATACATGGCTCAAATCTCACTCAAATTGTCCTCTTTGTCGCGCTACCATATTCGCCTTCAACGCTTCAAGTTCAAGTGCAACAACACTTCATTTAGCAGCACCGGTTATTGAACAATCTTCAAGGAATGAAGTTTCTTTAGAAAATCAACACTTGAATGAAATTGTAGATGTTGAAAGAGACAATGAATTGCATGAAGTGGAAGAAGTTCCAATTCCAAAGACTGAATTTCGCGCTTTAAGTGATTTAGGAAATTTAAGAGGAAGGCATAGTGTGATTGAGATTAGAGATAATGGAGATTACCATGAATCGATTCGAAGATCGGTTTCAATGGATCATTCCTTTCAAAGTGGTATTTCAGTTGTTGATGATGTTAATGTTATGCATATGAATCAAGAGCATGATTCTTCACAAATTGAAGGTTCATCAAAGAGAGTAAGAGATGAAAGTGAAAGTAGTAAGTGTAGTTATAGAAGAAAGGTTTTGCATTGTGTTTTGAGTCCAATTGCAATGAAGAGATCATTTTCAAGTGGAAGATTTTTCCTTAGTAGAACTAGTAGAGGAAGGCTTGGAATTTTGCATGTTTGA 1116 0.3647 MASLGNPKAWVPYMNNKDCSQGFCSLYCPQWCYAIYSPPPPSPFEFPDDDSSSNFSPLVIAIIGILASAFLLVTYYTIISKYCGRRVSSSQSESRETNEELEDNHHHHNHSIHEPWHLTTNGLDEALIKSITVCKYKKNDGLVDVTDCSVCLNEFQDYESIRLLPKCSHAFHLPCIDTWLKSHSNCPLCRATIFAFNASSSSATTLHLAAPVIEQSSRNEVSLENQHLNEIVDVERDNELHEVEEVPIPKTEFRALSDLGNLRGRHSVIEIRDNGDYHESIRRSVSMDHSFQSGISVVDDVNVMHMNQEHDSSQIEGSSKRVRDESESSKCSYRRKVLHCVLSPIAMKRSFSSGRFFLSRTSRGRLGILHV 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05822 371 PANTHER RING-H2 FINGER PROTEIN ATL16 43 326 IPR044600 GO:0016567|GO:0016740
Vifa1g05822 371 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 123 197 IPR013083 -
Vifa1g05822 371 MobiDBLite consensus disorder prediction 90 112 - -
Vifa1g05822 371 FunFam RING-H2 finger protein ATL54 123 196 - -
Vifa1g05822 371 CDD RING-H2_EL5-like 147 190 - -
Vifa1g05822 371 ProSiteProfiles Zinc finger RING-type profile. 148 190 IPR001841 -
Vifa1g05822 371 SMART ring_2 148 189 IPR001841 -
Vifa1g05822 371 Pfam Ring finger domain 147 190 IPR001841 -
Vifa1g05822 371 MobiDBLite consensus disorder prediction 92 112 - -
Vifa1g05822 371 SUPERFAMILY RING/U-box 127 195 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05822 Vifa-Chr1 911110285 911111400 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05822 1 330 C3H Transcription Factor Family AT3G03550 42.571 1.03e-69 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05822 - - gmx:100792267 455.292
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05822 1 911110285 911111400 Vifa1g05822 1 911110285 911111400 ECH