Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05820 ATGGCAATTGAAAATCAAGACAACTCCTCTGTCCGAGAAATCAAACCCAAAAACAGAAGAATCATGGGTGCTGGAGGTCCGGAAGAGGATGATAATAGATGGCCGCCATGGTTGAAGCCTTTGCTGAAAGAAAATTTCTTTGTTCAATGCAAGTTACATGCTGATTCACACAAAAGTGAATGTAACATGTATTGTTTGGATTGTATGAATGGTCCTATATGTTCCCTCTGTCTTGCTTACCATAAAGATCATAGTTTTATTCAGATTAGAAGATCTTCATACCATGATGTGATTCGAGTGAACGAGATTCAGAAGGTATTGGACATTACTGGTGTACAAACCTACATTATCAATAGTGCAAGAGTTGTGTTCTTGAATGAAAGGCCTCAGCCAAGGCCAGGGAAAGGTGTCACTAACACTTGTGAAGTTTGCGAGCGTAGTCTCCTCGATTCTTTTCGATTCTGCTCTCTTGGTTGCAAGATTGTAGGAACATCGAAGAATTTCCAGAAGAAAAAGAAACAGATAACAGCAATGGCATCAGATTCTGAAGATTCATACAGTAGTAACAACAGCAACAACAGCAACAACATTCATAGCCGTGAGAAGAAAATCAAAGTTCAAAGCTTCACACCATCAACACCACCTCCAACTTCTGTTAATTACAGAACAGCCAAGAGAAGAAAGGGAATACCACATAGAAGCCCATTGGGGGTAGATTATTGTGGTTTCTAG 732 0.3989 MAIENQDNSSVREIKPKNRRIMGAGGPEEDDNRWPPWLKPLLKENFFVQCKLHADSHKSECNMYCLDCMNGPICSLCLAYHKDHSFIQIRRSSYHDVIRVNEIQKVLDITGVQTYIINSARVVFLNERPQPRPGKGVTNTCEVCERSLLDSFRFCSLGCKIVGTSKNFQKKKKQITAMASDSEDSYSSNNSNNSNNIHSREKKIKVQSFTPSTPPPTSVNYRTAKRRKGIPHRSPLGVDYCGF 243
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05820 243 MobiDBLite consensus disorder prediction 178 230 - -
Vifa1g05820 243 PANTHER PLATZ TRANSCRIPTION FACTOR FAMILY PROTEIN 30 236 - -
Vifa1g05820 243 MobiDBLite consensus disorder prediction 178 197 - -
Vifa1g05820 243 Pfam PLATZ transcription factor 90 161 IPR006734 -
Vifa1g05820 243 MobiDBLite consensus disorder prediction 206 220 - -
Vifa1g05820 243 CDD Bbox2 50 89 - -
Vifa1g05820 243 MobiDBLite consensus disorder prediction 10 30 - -
Vifa1g05820 243 MobiDBLite consensus disorder prediction 1 30 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05820 Vifa-Chr1 909600744 909602450 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF PLATZ Vifa1g05820 PLATZ 4.4e-30 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05820 - - gmx:100791221 404.831
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05820 1 909600744 909602450 Vifa1g05820 1 909600744 909602450 ECH
Vifa1g05820 1 909600744 909602450 Vifa4g01887 4 531076527 531077689 PCT