Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05815 ATGAGCAATGAGAATGGACAGAAACCCCCACCGTCGATTCTCGTTGGTCGATTCAAGGCTTTGTTGAAGCAACGTGAAGATGACCCAAGGCTGAGAAATTCGCAACCTTCAACGGAAGAAATTGTGCAGATTTACGAGGCTTTGTTGGGTGAACTCACGTCGAATGTGAAACCTATCATCACTGATCTTACCATCATTGCTGAACAACATAGGGAACATGCTAGAGGAATCGCTTATGCTATTTGCGCTCGTATTCTCGAGGTGTCTGCAGATCATAAGCTTCCTTCACTCTATCTCTTGGACAGTGTTGTGAAGAATGTTGGCCAGGAATATGTTCGATACTTCTCGTTACGTCTACCCGAAGTTTTCTGCGAGGCATACAGACAGGTTAATCCAAGTTTGCATTCTGCCATGCGACATCTCTTTAGTACCTGGTCAAAAGTTTTCCCTCCCTCTGTCTTACGGAAGATTGAAGTGCAATTGCAATTTTCTTCAGCAGTTAATAATCAACCATCAAGTGTTAATCCCCTCAGGGCTTCTGAATCTCCTCGGCCAACTCATGGGATACATGTTAACCCAAAATACATAAGACAAATGGAACATTCTACTTCAATTATGGATAGTGTTGTGGGTGAAAGGTTAGGTTCACCAGGAACTGTAGGAAATGCAAATTTTGGCCTTGCAGCTAATAAGGTTCAACAATTTGTGCCAAGTAGGGTTGGCAAATCCTCTTCACCGTCAGGAATTGGACATGATAGGCATATGCCCTCATATATTGATGAATATGTAGTTGACCATTCTGCTGGCAGGACAGTTGAGAGAGAATCTCCTCATCGTGCTGTTGATTATGGACTAATTAAAGGATTAGGTAGAGAAGAAGAGTTGCGTGAGTGGCCGCGAAAGCAGTTTACTGGTGATGGTCCGAAGAGATTTCCAGCTTCTATGACATACAGTCTTAGTAACGGACAACCTCGCCAAAATCCAAGAGCTCTAATTGATGCCTATGGTAGTGACAAAAGCCAAGAAACTTCTGGCAGTAAGCCTTTGTTAGTTGAGCGGCTGGATAGAAATGGTATGGATAAGGTTTTGACAACATCATGGCAGAACACGGAAGAGGAGGAGTTTGATTGGGAAGATATGAGTCCAACATTAGTGGATAGTCGAAACAATGGTTTCCTGCAACCAACTATTGGTTTCTCCTCAGAAAAGCCTGTTAACGTTGCAGCAAGTGCAACTTCTTCAGTGTCAAGGATATTTCCTGGTTTCAAGTCTAATATGGAGTACCGTCCACCAGTTTTGCCAGCAACTTTTGAAATAAGGAACTCTATAAATGTGCATGCTCCTCGTCCTCCCAGCTTAAATCCTATGTTTCCATTGAAGAATCCTGTTAGGAACCCATTCGAATCAATAAATGCTAATAGTGCCATTGTGAGTCATGGTCCAAATAGACCTTTTCCGATCCATGAACAATCGTTGCCTGGTGTTGAGAACAATGACATCAGTAAAAGAAACCCGTATCAGTTGCCTAATCAGCTCGCTGGTCTGATTTCATCTAATCTGCAAAACCCTGGACAAACACCGCCGTTACAGTTTTTTCCATCTCAGGATCCAGCAGCATCGCAATTTAGTTATAGGCCCTCTTTGCAAGGACATGGTGCTGCTATAAGTACCCCCATGTCAAATGTACGACCTGTTATGCCATTCCCTTTGCCTGGCCAAAGAACCACAAACAACTCTTTTCAATTCCAGGGAGGACCGTTGCGGCCTTTACCTCCAGCCGGTCCACATCCTCCATCCCAGATGTTACATCATCCCAATCCTAGTTCTTTTGCTTCAAGTCAACAGCCCACTGTTGGATATTCTAATTTGATTAATTCACTCATGGCCCAAGGTGTAATCTCATTGGCTAATCAAGCCCCTGCACAAGATGTTGTTGGAATTGAGTTTGATCCAGATATTCTGAAGGTCCGTCATGAATCTGCAATCAAAGCCTTATATGGCGATCTTCCTAGACAATGCACAACTTGTGGCCTCCGTTTTAAATCCCAAGATGAGCACAGCAGTCACATGGATTGGCATGTGACTAAGAACCGTATGTCTAAAAACCGTAAGCAAAAACCCTCTCGCAAGTGGTTTGTGAGTGAGACGATGTGGCTTAGTGGTGCAGAGGCATTGGGAGCTGAATCAGCTCCAGGTTTTTTGCCAACCGAGACCACCGAGGAAAAGAAAGAAGATGAAGAGTTGGCGGTTCCTGCTGAAGAGGACCAAAATACATGTGCATTATGTGGAGAGCCTTTTGATGAGTTTTACAGTGATGAAACAGAGGAGTGGATGTATAGAGGAGCCGTATACCTTAATGCGCCTAACGGAATAACAGCGGGCATGGACAGGTCGCAGTTAGGCCCCGTTATCCATGCTAAATGCAGATCTGAATCTACTACCACCCCGTCTGAAGATTGTGTGATGGACGAAGGGGGCACCTATGAAGAAGGAAATGAAAGAAAACGAGTCCGGGTCGTCTGA 2523 0.4427 MSNENGQKPPPSILVGRFKALLKQREDDPRLRNSQPSTEEIVQIYEALLGELTSNVKPIITDLTIIAEQHREHARGIAYAICARILEVSADHKLPSLYLLDSVVKNVGQEYVRYFSLRLPEVFCEAYRQVNPSLHSAMRHLFSTWSKVFPPSVLRKIEVQLQFSSAVNNQPSSVNPLRASESPRPTHGIHVNPKYIRQMEHSTSIMDSVVGERLGSPGTVGNANFGLAANKVQQFVPSRVGKSSSPSGIGHDRHMPSYIDEYVVDHSAGRTVERESPHRAVDYGLIKGLGREEELREWPRKQFTGDGPKRFPASMTYSLSNGQPRQNPRALIDAYGSDKSQETSGSKPLLVERLDRNGMDKVLTTSWQNTEEEEFDWEDMSPTLVDSRNNGFLQPTIGFSSEKPVNVAASATSSVSRIFPGFKSNMEYRPPVLPATFEIRNSINVHAPRPPSLNPMFPLKNPVRNPFESINANSAIVSHGPNRPFPIHEQSLPGVENNDISKRNPYQLPNQLAGLISSNLQNPGQTPPLQFFPSQDPAASQFSYRPSLQGHGAAISTPMSNVRPVMPFPLPGQRTTNNSFQFQGGPLRPLPPAGPHPPSQMLHHPNPSSFASSQQPTVGYSNLINSLMAQGVISLANQAPAQDVVGIEFDPDILKVRHESAIKALYGDLPRQCTTCGLRFKSQDEHSSHMDWHVTKNRMSKNRKQKPSRKWFVSETMWLSGAEALGAESAPGFLPTETTEEKKEDEELAVPAEEDQNTCALCGEPFDEFYSDETEEWMYRGAVYLNAPNGITAGMDRSQLGPVIHAKCRSESTTTPSEDCVMDEGGTYEEGNERKRVRVV 840
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05815 840 MobiDBLite consensus disorder prediction 588 602 - -
Vifa1g05815 840 FunFam polyadenylation and cleavage factor homolog 4 34 162 - -
Vifa1g05815 840 ProSitePatterns Zinc finger C2H2 type domain signature. 673 693 IPR013087 -
Vifa1g05815 840 MobiDBLite consensus disorder prediction 574 615 - -
Vifa1g05815 840 ProSiteProfiles CID domain profile. 37 165 IPR006569 -
Vifa1g05815 840 Gene3D - 30 162 IPR008942 -
Vifa1g05815 840 CDD CID_Pcf11 45 162 IPR047415 -
Vifa1g05815 840 Pfam CID domain 49 156 IPR006569 -
Vifa1g05815 840 SMART 558neu5 40 162 IPR006569 -
Vifa1g05815 840 SUPERFAMILY ENTH/VHS domain 36 162 IPR008942 -
Vifa1g05815 840 PANTHER PRE-MRNA CLEAVAGE COMPLEX II 33 822 IPR045154 GO:0000993|GO:0003729|GO:0006369|GO:0006378|GO:0006379
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05815 Vifa-Chr1 907483998 907489363 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05815 14 838 C2H2 Transcription Factor Family AT4G04885 46.145 0.0 632
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vifa1g05815 CID 2e-12 CL0020
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05815 K14400 - fve:101292683 699.123