Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05813 ATGGATATGACGATAAAGAATGAAGAGAACAAGAGAATGAACTGCATGTACATGGCAGATAATGATTTTCAAGTAACTGCCAAAAGACGTCTAAGGGGGCCTGTGCTTACTTCTGAGGAAAACCAAGGTCAGAAGCAACAAATTTGTCAAAATTCTATTACCAACACCACAAAGAGAAGTTCAAGATTTCGGGGTGTCAGCAGACATAGATGGACGGGTAGATATGAAGCTCACTTATGGGACAAGCTTTCTTGGAACATAACCCAAAAAAAGAAAGGGAAGCAAGGGGCTTACGATGATGAAATATCAGCAGCCAGAGCATATGATTTAGCTGCACTAAAGTACTGGGGAACATTGACAGTCACCAATTTTCCTGTTGTAGAGTATGAAGAACAAGTAGAAATAATGCAAACTATGACAAAAGAAGAGTACTTGGCCACTTTAAGAAGAAAGAGCAGCGGCTTTTCAAGAGGGGCATCAAAGTATAGGGGTGTTGCAAGGCACCACCACAATGGTAGATGGGAAGCACGAATCGGAAGGGTTTTTGGAAACAAGTATCTTTACCTTGGCACCTACAGTACCCAAGAGGAAGCTGCTCGTGCTTATGACATAGCAGCCATTGAGTACAGAGGGAGTCATGCTATAACCAACTTTGACTTGAGTACTTACATGAGATGGTTAAAATCTTCAGCAGGAAATATCTCAGAAACAAAACTCGAAAAGCTGGAAATACCAGAGTCTCAGACAGTGGCATCCCAATCTAACTGTTTTCCAATTAACGGATCGAAATCCTTGGCCATCCAGAGCAGTACTTATAACTCAGATTATCTGAATTCCCCTCAAAAGTATGAAGTTTTTGACAATAAAAAATACCAAATGTCCAGCCCTAGGTCATGTTCTTCTCCCACTGCACTTGGGCTGCTTTTCCGCTCTACAGTATTTAGAGAATTAGTGAAAAAGAATTCAAACATATCTGGAGATGAAACTGATGGGGAAGACACAAATGATCGACAGCCAAAGACGGCAAGTGACAATGACGATGAGTTGGATGGGATCTTCTGTGATGGAATTGGGGATATCCCATTTCTGAAACCCCAATAG 1101 0.4142 MDMTIKNEENKRMNCMYMADNDFQVTAKRRLRGPVLTSEENQGQKQQICQNSITNTTKRSSRFRGVSRHRWTGRYEAHLWDKLSWNITQKKKGKQGAYDDEISAARAYDLAALKYWGTLTVTNFPVVEYEEQVEIMQTMTKEEYLATLRRKSSGFSRGASKYRGVARHHHNGRWEARIGRVFGNKYLYLGTYSTQEEAARAYDIAAIEYRGSHAITNFDLSTYMRWLKSSAGNISETKLEKLEIPESQTVASQSNCFPINGSKSLAIQSSTYNSDYLNSPQKYEVFDNKKYQMSSPRSCSSPTALGLLFRSTVFRELVKKNSNISGDETDGEDTNDRQPKTASDNDDELDGIFCDGIGDIPFLKPQ 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05813 366 ProSiteProfiles AP2/ERF domain profile. 62 125 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 PRINTS Ethylene responsive element binding protein signature 63 74 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 PRINTS Ethylene responsive element binding protein signature 201 221 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 CDD AP2 160 221 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 SUPERFAMILY DNA-binding domain 61 126 IPR016177 GO:0003677
Vifa1g05813 366 FunFam AP2-like ethylene-responsive transcription factor 160 221 - -
Vifa1g05813 366 MobiDBLite consensus disorder prediction 323 366 - -
Vifa1g05813 366 Gene3D AP2/ERF domain 160 221 IPR036955 GO:0003700|GO:0006355
Vifa1g05813 366 Gene3D AP2/ERF domain 61 127 IPR036955 GO:0003700|GO:0006355
Vifa1g05813 366 PANTHER AP2-LIKE ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR 33 249 - -
Vifa1g05813 366 SMART rav1_2 62 131 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 SMART rav1_2 161 225 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 ProSiteProfiles AP2/ERF domain profile. 161 219 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 Pfam AP2 domain 160 211 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 Pfam AP2 domain 61 117 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 SUPERFAMILY DNA-binding domain 160 221 IPR016177 GO:0003677
Vifa1g05813 366 CDD AP2 61 127 IPR001471 GO:0003700|GO:0006355
Vifa1g05813 366 MobiDBLite consensus disorder prediction 323 347 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05813 Vifa-Chr1 907317174 907319330 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05813 34 223 AP2-EREBP Transcription Factor Family AT5G57390 61.140 8.73e-78 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-AP2 Vifa1g05813 AP2 2.9e-08 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05813 - - ahf:112716370 504.212
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05813 1 907317174 907319330 Vifa1g05813 1 907317174 907319330 ECH