Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05799 ATGAATCTCTGGAGCGACGATAACTCTTCAGTCATGGAGGCTTTCATGACCTCCTCTGATTTATCCACCTTATGGCCACCGGCGCCTCCGTCGCAGCCACCACAAACAGCCACCGGATTCAACCAAGACACGCTGCAGCAAAGACTTCAAGCTTTGATAGAAGGCGCATCGGAGCTCTGGACCTACGCTATCTTCTGGCAACCGTCTTATGACTATTCAGGCTCTTCTCTTCTCGGTTGGGGTGACGGTTACTACAAAGGAGAAGAAGATAAAACAAAAGCGAAATCAAAGTCGAAATCTAAAGCCTCTTCACCAGCTGAACAAGAACACCGGAGAAAAGTTCTCAGAGAACTTAATTCTTTAATCTCCGGTAATCCGGTCACCGACGAATCCGCCGTCGATGAGGAAGTAACCGATACCGAATGGTTCTTTTTAGTTTCTATGACGCAGTCGTTTGTCAACGGCGGCGGACTTCCCGGACAGGCTTACTTTAACTCAACTCCGGTGTGGTTGGTCGGCGGGGAGAGTCTTTCCATCTCGGCGTGCGAGAGAGCGAGACAGGGTCAGGAATACGGTTTACAGACGCTGGCGTGTATACCGTCGGCGAACGGTGTTTTGGAGCTTGGATCTACGGAGTTGATTTATCAAAACAGTGATTTGATGAATAAAGTGAAGATGCTTTTCAATTTCAATAATAGCTTTGAGTTTGGATCTTCTTGGCAGTTAGGTAATTCTAATTCTGCTGCAATTGCTCATCAAGGTGAAAATGATCCTTCTTCGATTTGGCTTAACGATGCTGAAGCTAGAGATTCGGTTGATAATAATTCTCTTGTTGCAACAACAACAAACACTTCAGTTTCAAATCCAAGTCACCAACACCAACCTCAGAACAATAACAATAATCAGAGTTTGAGTGTGAGTGTTACAAAGACTATACAATTTGAAACTCATGGTTCAAGTACTGTGACAGAAGTTCCTAGTGTTCATGTTTCAAGCAAGCAGAATAATCAAAGTTTCTTTAATAAGGAAATGATTCTTTCTGAATATGGTGGGAGTAATAATCAGCAACGTTCTTTGAAGCCGGAATCCGGTGAGATTCTGAGCTTCGGAGGCGAGAGTAATAAGAGTTCTTATGTTGCTAATAATGGAAATTCAAATTCGAATTTCTTCTCGGGTCAATCACATATAGTTTCAGTGGCTGAGGAAAACCATAACAACAACATCAACAATGGAAACGGAAAGAGGAGATCCCCGAATTCGAGAGGAAGCAATAACGATGATGGAATGTTATCTTTTACTTCTGGTGTAATTGTTCCACCGGCGGCGTCTAATTTGAAATTCTCTGGTGGTACTGGTTGTGGTGATTCGGACCATTCGGATCTGGAGGCTTCGGTGGTGAAGGAGGTGGATAGCAGTCGTGTGGTGGAGCCGGAAAAGAAGCCGAGGAAGAGAGGAAGGAAACCGGCAAATGGAAGAGAAGAACCGTTGAATCATGTTGAAGCTGAGAGACAAAGAAGAGAGAAGCTGAATCAGAGATTCTATGCACTTCGTGCAGTTGTGCCTAATGTTTCAAAGATGGATAAAGCTTCACTTTTGGGAGATGCTATATCTTACATTACTGAACTGAAAACAAAGCTTCAGAAAACAGAATCTGATAAAGATGGATTGGAAAAACAACTTGAGGAAGTGAAGAGTGAACTTCAGAAAATCAATGAAAACTCGTCTCATCCGCCACCCGCACCACCACAACAACAGCAACAACCAGTATCCAAAAAGCCATCACCTTCCAATCAAGCCTTAATTGATTTGGATATCGACGTCAAGATTATAGGGTGGGATGCAATGATTAGGATCCAATGCAGTAAGAAAAACCACCCCGCAGCAAGATTGATGGCGGCGTTGATGGAGCTTGACCTAGAAGTGCACCATGCTAGTGTGTCTGTGGTGAATGACTTGATGATACAACAAGCAACTGTGAAGATGGGGAGTCGATTTTACACCCAAGAGCAGCTTCGGGCAGCATTGTCCTCTAAAGTTGGGGATGTTCAATAA 2052 0.4386 MNLWSDDNSSVMEAFMTSSDLSTLWPPAPPSQPPQTATGFNQDTLQQRLQALIEGASELWTYAIFWQPSYDYSGSSLLGWGDGYYKGEEDKTKAKSKSKSKASSPAEQEHRRKVLRELNSLISGNPVTDESAVDEEVTDTEWFFLVSMTQSFVNGGGLPGQAYFNSTPVWLVGGESLSISACERARQGQEYGLQTLACIPSANGVLELGSTELIYQNSDLMNKVKMLFNFNNSFEFGSSWQLGNSNSAAIAHQGENDPSSIWLNDAEARDSVDNNSLVATTTNTSVSNPSHQHQPQNNNNNQSLSVSVTKTIQFETHGSSTVTEVPSVHVSSKQNNQSFFNKEMILSEYGGSNNQQRSLKPESGEILSFGGESNKSSYVANNGNSNSNFFSGQSHIVSVAEENHNNNINNGNGKRRSPNSRGSNNDDGMLSFTSGVIVPPAASNLKFSGGTGCGDSDHSDLEASVVKEVDSSRVVEPEKKPRKRGRKPANGREEPLNHVEAERQRREKLNQRFYALRAVVPNVSKMDKASLLGDAISYITELKTKLQKTESDKDGLEKQLEEVKSELQKINENSSHPPPAPPQQQQQPVSKKPSPSNQALIDLDIDVKIIGWDAMIRIQCSKKNHPAARLMAALMELDLEVHHASVSVVNDLMIQQATVKMGSRFYTQEQLRAALSSKVGDVQ 683
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05799 683 MobiDBLite consensus disorder prediction 404 431 - -
Vifa1g05799 683 Coils Coil 539 573 - -
Vifa1g05799 683 Pfam Helix-loop-helix DNA-binding domain 497 542 IPR011598 GO:0046983
Vifa1g05799 683 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 493 542 IPR011598 GO:0046983
Vifa1g05799 683 MobiDBLite consensus disorder prediction 565 597 - -
Vifa1g05799 683 PANTHER MYC 13 678 IPR045084 GO:0003700|GO:0006355
Vifa1g05799 683 FunFam Transcription factor bHLH13 486 560 - -
Vifa1g05799 683 MobiDBLite consensus disorder prediction 448 503 - -
Vifa1g05799 683 SMART finulus 499 548 IPR011598 GO:0046983
Vifa1g05799 683 CDD bHLH_AtAIB_like 490 566 - -
Vifa1g05799 683 MobiDBLite consensus disorder prediction 460 503 - -
Vifa1g05799 683 Pfam bHLH-MYC and R2R3-MYB transcription factors N-terminal 45 228 IPR025610 -
Vifa1g05799 683 Gene3D - 485 574 IPR036638 GO:0046983
Vifa1g05799 683 MobiDBLite consensus disorder prediction 404 434 - -
Vifa1g05799 683 MobiDBLite consensus disorder prediction 280 302 - -
Vifa1g05799 683 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 494 566 IPR036638 GO:0046983
Vifa1g05799 683 MobiDBLite consensus disorder prediction 89 111 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05799 Vifa-Chr1 904496815 904498866 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05799 1 680 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G32640 53.050 0.0 629
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g05799 bHLH-MYC_N 1e-53 CL0161
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05799 K13422 - gmx:100776289 813.913
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05799 1 904496815 904498866 Vifa1g05799 1 904496815 904498866 ECH