Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05798 ATGGTGGACTCAACAATTTGGAAGAAGCTCAAGCTTTTGTTTAGTTGTATGCCCAGAAGTTTTTCACATGTTGATAAGGATGTTGATACTACACCAAAATCATCTACAAACAGTAACTCGAGAGCATCAAAATATCCAACTCCTATTGGCATACCTTATTATTCTCATCTAAAGCAATTCAGATATCATGAACTAATGTTAGCAACAAGAAATTTTAAACCAGAATTATTTCTTGGCGAGGGAGGGTTTGGTAAAGTGTTCAAAGGTTGGATATGTCAAAATGAGAGGTCTCCTTCAAGACACAGAATTATGATGTCAATTGCTGCTGAAATTAACCATCTCGGTGTTCTCCATCATCCAAATCTTGTAAAACTTATTGGTTATTGTATCGAAGATGAACATAGAATACTTGTTTATGAGTACATGCCAAGAGGAAGTCTTGAAAATCATTTGTTTAAGAGACGAGCTATGGCTCTCACATGGGACGTGAGAATAAAAATTATGCTCGATGCTGCAAAGGGTCTTGCATTTCTGCATGAGGATAGTCGCACATTATCTTCTTCACCATTACCTACACCACCATCATCATCCAATCATAGATCTTCTTCACCATTACCTACACCACCAAATTCCTCTAGATATGGTGGAGGAGGCAGTGCAAGTAAATATAATCTCAAAGTTGGTTTGTGA 690 0.3725 MVDSTIWKKLKLLFSCMPRSFSHVDKDVDTTPKSSTNSNSRASKYPTPIGIPYYSHLKQFRYHELMLATRNFKPELFLGEGGFGKVFKGWICQNERSPSRHRIMMSIAAEINHLGVLHHPNLVKLIGYCIEDEHRILVYEYMPRGSLENHLFKRRAMALTWDVRIKIMLDAAKGLAFLHEDSRTLSSSPLPTPPSSSNHRSSSPLPTPPNSSRYGGGGSASKYNLKVGL 229
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05798 229 ProSiteProfiles Protein kinase domain profile. 72 229 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05798 229 Gene3D Transferase(Phosphotransferase) domain 1 143 188 - -
Vifa1g05798 229 MobiDBLite consensus disorder prediction 184 229 - -
Vifa1g05798 229 Pfam Protein tyrosine and serine/threonine kinase 78 181 IPR001245 GO:0004672|GO:0006468
Vifa1g05798 229 PANTHER OS01G0588500 PROTEIN-RELATED 38 181 - -
Vifa1g05798 229 SMART tyrkin_6 72 227 IPR020635 GO:0004713|GO:0006468
Vifa1g05798 229 Gene3D Phosphorylase Kinase; domain 1 53 141 - -
Vifa1g05798 229 SUPERFAMILY Protein kinase-like (PK-like) 40 180 IPR011009 -
Vifa1g05798 229 MobiDBLite consensus disorder prediction 184 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05798 Vifa-Chr1 904409368 904411841 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05798 52 182 Receptor kinase-like Gene Family AT5G56890 44.444 2.76e-31 119
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VIIa-2 Vifa1g05798 PK_Tyr_Ser-Thr 2.4e-15 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05798 - - mtr:25490803 199.904