Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05795 ATGGATTTTCCACCTTCTCACACTTTCATCTTTCAAACTCATCAAGATCATCATCATGATCAACTTCATTCATCTTCAACCTCTCTCAACTCTTTCCCTTCCTTTCCACCTCATCAACACTTTCAAGGTGGTGGTGCATCTTTCATGATGAAGAGATCCATGTCATTTTCAGACATAGAGAACAATCATAATCATAATCACAATCACAACTACAATCATCACAACAAGTGTGGTGAATTGATGCATGGTGATGAAGATCAATTATCAGATGATGAAGGTTACTCCCAACTTGGTGAAAAGAAGAAGAGATTGAGTTTAGAACAAGTGAAGGCACTTGAGAAGAGTTTTGAGATTGGAAACAAACTTGAACCTGAGAGAAAAATGCAATTAGCAAAAGCTTTGGGATTACAACCTAGACAAGTAGCTATATGGTTTCAAAATAGAAGAGCAAGGTGGAAAACAAAGCAACTTGAGAAAGAATATGAAGTTCTTAAGAAGCAATTTGAATCCCTTAAAGCTGATAATGATGCTCTTAAGGCTCAAAACAACAAATTACATGCAGAGTTACAAACTCTAAAGAAAAAGGATTGCTTTGAAAATGGAAAAGCTAGTCTCAAAAAAGAAAATGAAGGTTCATGGAGTAATGGAAGTGATAACAGTTCAGATATGAATCTAGATCTTTCTAGAACACCAATGATGAGCAGTCCTGTTTCTTCACAAAATGGTAAAAGTCTTATGCAAACTTCCCTTAAGCCTACAAGCATGACACAACTCCTTCATTGCTCAACAAGATCTGATCTTCAAGATGAAAGCTTTTGCAACATGTTTCACAACATTGATGAGCAACAAAGTTTATGGCCATGGCCTGATCAGCAGCCGCACCATTTCCATTAA 894 0.3658 MDFPPSHTFIFQTHQDHHHDQLHSSSTSLNSFPSFPPHQHFQGGGASFMMKRSMSFSDIENNHNHNHNHNYNHHNKCGELMHGDEDQLSDDEGYSQLGEKKKRLSLEQVKALEKSFEIGNKLEPERKMQLAKALGLQPRQVAIWFQNRRARWKTKQLEKEYEVLKKQFESLKADNDALKAQNNKLHAELQTLKKKDCFENGKASLKKENEGSWSNGSDNSSDMNLDLSRTPMMSSPVSSQNGKSLMQTSLKPTSMTQLLHCSTRSDLQDESFCNMFHNIDEQQSLWPWPDQQPHHFH 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05795 297 ProSiteProfiles 'Homeobox' domain profile. 95 155 IPR001356 GO:0003677
Vifa1g05795 297 CDD homeodomain 100 156 IPR001356 GO:0003677
Vifa1g05795 297 Pfam Homeobox associated leucine zipper 155 195 IPR003106 GO:0006355|GO:0043565
Vifa1g05795 297 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN 68 288 IPR045224 GO:0003700
Vifa1g05795 297 FunFam Homeobox-leucine zipper protein ATHB-13 91 159 - -
Vifa1g05795 297 ProSitePatterns 'Homeobox' domain signature. 130 153 IPR017970 GO:0000981|GO:0006355
Vifa1g05795 297 Pfam Homeodomain 100 153 IPR001356 GO:0003677
Vifa1g05795 297 Gene3D - 98 162 - -
Vifa1g05795 297 SMART HOX_1 98 159 IPR001356 GO:0003677
Vifa1g05795 297 MobiDBLite consensus disorder prediction 207 245 - -
Vifa1g05795 297 PRINTS Lambda-repressor HTH signature 126 135 IPR000047 GO:0003677
Vifa1g05795 297 PRINTS Lambda-repressor HTH signature 135 151 IPR000047 GO:0003677
Vifa1g05795 297 SUPERFAMILY Homeodomain-like 89 157 IPR009057 -
Vifa1g05795 297 Coils Coil 147 195 - -
Vifa1g05795 297 MobiDBLite consensus disorder prediction 15 38 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05795 Vifa-Chr1 903446073 903448534 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05795 5 290 Homeobox Transcription Factor Family AT3G01220 49.485 9.71e-81 244
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vifa1g05795 Homeodomain 4.3e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05795 K09338 - gmx:100790803 391.349
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05795 1 903446073 903448534 Vifa1g05795 1 903446073 903448534 ECH
Vifa1g05795 1 903446073 903448534 Vifa1g05795 1 903446073 903448534 PCT