Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05784 ATGGGAGATGTGGCTAAGGACCTTACTGCTGGAACTATTGGTGGGGCAGCACAACTAATAGTTGGTCACCCATTTGACACCATAAAGGTCAAGCTCCAAAGTCAGCCTACACCACTTCCTGGCCAGGTTCCGAAATATTCCGGTGCAATTGATGCTGTCAAGAAGACAATAGCAGCTGAAGGTCCAGGGGGTTTATACAAAGGCATGGGAGCACCATTTGCTACCGTAGCCGCCTTCAATGCTGTCCTATTTACAGTTAGAGGACAAATGGAAACATTGTTGAGATCATCTCCTGGTGATACCCTCACAATAAACCAGCAGGTTGTTTGTGGAGCTGCAGCTGGACTTTCTGTTTCCTTCCTAGCTTGTCCTACTGAACTGCTCAAATGCAGGTTACAAGCACAGAGCGCACTCGCTGGTTCAGGAACAGCAACATTGGCGGTGAAATATGGCGGACCAATGGATGTGGCCAGACATGTTCTCAGATCAGAAGGCGGCATAAAGGGTCTTTTCAAAGGAGGCACCGACACCTCAGGACTTGGTAGAGGCTCTCTGATGGCTTCCGGAGGCTTGGCCGGCGCTGCTTTTTGGTGTATGGTCTATCCAACTGATGTTGTTAAGAGTGTGTTGCAAGTTGATGATTACAAAAATCCAAAGTTTTCTGGTTCAATTGATGCTTTCAGAAGGATAAAAGCCACTGAGGGAATTAAAGGCCTTTACAAAGGTTTTGGTCCTGCAATGTTCAGAAGTGTTCCTGCAAATGCAGCATGTTTCTTGGCATATGAGATGACAAGATCAGCTTTGGGATGA 810 0.4691 MGDVAKDLTAGTIGGAAQLIVGHPFDTIKVKLQSQPTPLPGQVPKYSGAIDAVKKTIAAEGPGGLYKGMGAPFATVAAFNAVLFTVRGQMETLLRSSPGDTLTINQQVVCGAAAGLSVSFLACPTELLKCRLQAQSALAGSGTATLAVKYGGPMDVARHVLRSEGGIKGLFKGGTDTSGLGRGSLMASGGLAGAAFWCMVYPTDVVKSVLQVDDYKNPKFSGSIDAFRRIKATEGIKGLYKGFGPAMFRSVPANAACFLAYEMTRSALG 269
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05784 269 Gene3D Mitochondrial carrier domain 2 176 IPR023395 -
Vifa1g05784 269 Pfam Mitochondrial carrier protein 4 95 IPR018108 -
Vifa1g05784 269 Pfam Mitochondrial carrier protein 186 268 IPR018108 -
Vifa1g05784 269 Pfam Mitochondrial carrier protein 102 173 IPR018108 -
Vifa1g05784 269 SUPERFAMILY Mitochondrial carrier 3 262 IPR023395 -
Vifa1g05784 269 ProSiteProfiles Solute carrier (Solcar) repeat profile. 2 93 IPR018108 -
Vifa1g05784 269 ProSiteProfiles Solute carrier (Solcar) repeat profile. 180 267 IPR018108 -
Vifa1g05784 269 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 183 268 - -
Vifa1g05784 269 Gene3D Mitochondrial carrier domain 177 269 IPR023395 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05784 Vifa-Chr1 901470715 901471721 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05784 22 263 Antiporters AT1G79900 30.403 4.32e-28 107
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05784 K15109 - gmx:100781634 457.988
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vifa1g05784 1 901470715 901471721 Vifa1g05784 1 901470715 901471721 ECH