LGRPv2

Gene search

Sequence information

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Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vifa1g05780	ATGGCTGCGGTAGTGATTGACGGAATGGCTAAAAGGAAGAAAGATGAAGATAATGACAATGACTCTTTGTCATCATATAATAATACTAAGAAACGTCGTGTTGTTTGGTCAGATGATCTTCATGCGAAGTTTGTTGAAGCTGTTAACCTACTTGGGTTACATGATGTTGTTCCCAAAAAAATAGTTGGTTTGATGAATGTTGATGGCATTACTAGCAAACATGTCGCAAGCCATCTCCAGAAATATAGACTCGGTAAGAAAAAGGCTGCTCACAAGGTTCCTTCAACACTCACTCAACAGCCTACTCAATCTCAATACATCAACATCCATCCATCAAATTTACTCCTCCATAACAAAAAGTGTGTTGACAAGGTTCCTTCAACACTTGTTCAGCCTACTCAATCTCAAAACATCCACAACAACTTGTTAAACATCCATCCATCATACAAGTTTCCGGTAAATGAAACCTCAACTCTACTCCTCCCTAACAAAATGCCTCTCCATCAATTGAACATGAGTGGAGTTGCTCCTTCACCACCATCATCCACCTTTCCTATATATCATCAAACCTCTATTTTTCCAACTCAATCTCAAAACATCATCAACAACTCATTTAACATTCATCCATCATACAATTTTCCTGTTAATCAAACCTCAACTTTACTCCTCCCTAACAAAATGCCTCTCCATCAATCTCACCCACAAGTTTACTCTCCATCCGGGACATTTGTTGGAACTGCTTCTTCAAAAAGCACAAGCATTTCGGATTATGATTGGTATCATAAATACATGAAAAAGGAACCTCAGCTACTTCAGTTACCCAACAATTCTTTTCCGGTATTGGATTCTGACAAAACAAGTCAAATGAACAACAATTCACAGCAGACACATAATGTTGTTGAGCCATTTATTGTTGGATCTGCTTCTTCTTTGGAAGATAAAAACACCAATATTTGGTGTGATGCTAATAGCTTTATTGACTTTCCGGTTGAAGAAACAGATCCTAAGACTTTAGAGGATATTGCAAATATGAGCAGATGCATAGAAGAAGAGGATCTCATTAATGTTTGGAGGTACTTCCAAGAAGAGGATGTCACTAATGTTATGCAGCAGCCTTCATGTTGTTAA	1128	0.3785	MAAVVIDGMAKRKKDEDNDNDSLSSYNNTKKRRVVWSDDLHAKFVEAVNLLGLHDVVPKKIVGLMNVDGITSKHVASHLQKYRLGKKKAAHKVPSTLTQQPTQSQYINIHPSNLLLHNKKCVDKVPSTLVQPTQSQNIHNNLLNIHPSYKFPVNETSTLLLPNKMPLHQLNMSGVAPSPPSSTFPIYHQTSIFPTQSQNIINNSFNIHPSYNFPVNQTSTLLLPNKMPLHQSHPQVYSPSGTFVGTASSKSTSISDYDWYHKYMKKEPQLLQLPNNSFPVLDSDKTSQMNNNSQQTHNVVEPFIVGSASSLEDKNTNIWCDANSFIDFPVEETDPKTLEDIANMSRCIEEEDLINVWRYFQEEDVTNVMQQPSCC	375

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Annotation information

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Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Vifa1g05780	375	ProSiteProfiles	Myb-type HTH DNA-binding domain profile.	28	87	IPR017930	-
Vifa1g05780	375	MobiDBLite	consensus disorder prediction	1	26	-	-
Vifa1g05780	375	Gene3D	-	27	89	-	-
Vifa1g05780	375	Pfam	Myb-like DNA-binding domain	33	83	IPR001005	-
Vifa1g05780	375	FunFam	Two-component response regulator	27	90	-	-
Vifa1g05780	375	PANTHER	HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED	13	293	IPR044841	GO:0003700\|GO:0006355
Vifa1g05780	375	SUPERFAMILY	Homeodomain-like	29	88	IPR009057	-
Vifa1g05780	375	NCBIfam	myb-like DNA-binding domain, SHAQKYF class	31	85	IPR006447	GO:0003677

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Duplication type information

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Select	Gene	Chromosome	Start	End	Duplicated_type
	Vifa1g05780	Vifa-Chr1	901281612	901283331	Dispersed

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Functional genes information

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Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vifa1g05780	10	84	Response Regulator Gene Family	AT3G16857	52.564	5.47e-18	83.6

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Transcription factors information

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Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	GARP-G2-like	Vifa1g05780		Myb_DNA-binding	8.2e-06	CL0123

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Pathway information

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Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vifa1g05780	-		K14491	psat:127108097	248.825

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