Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05780 ATGGCTGCGGTAGTGATTGACGGAATGGCTAAAAGGAAGAAAGATGAAGATAATGACAATGACTCTTTGTCATCATATAATAATACTAAGAAACGTCGTGTTGTTTGGTCAGATGATCTTCATGCGAAGTTTGTTGAAGCTGTTAACCTACTTGGGTTACATGATGTTGTTCCCAAAAAAATAGTTGGTTTGATGAATGTTGATGGCATTACTAGCAAACATGTCGCAAGCCATCTCCAGAAATATAGACTCGGTAAGAAAAAGGCTGCTCACAAGGTTCCTTCAACACTCACTCAACAGCCTACTCAATCTCAATACATCAACATCCATCCATCAAATTTACTCCTCCATAACAAAAAGTGTGTTGACAAGGTTCCTTCAACACTTGTTCAGCCTACTCAATCTCAAAACATCCACAACAACTTGTTAAACATCCATCCATCATACAAGTTTCCGGTAAATGAAACCTCAACTCTACTCCTCCCTAACAAAATGCCTCTCCATCAATTGAACATGAGTGGAGTTGCTCCTTCACCACCATCATCCACCTTTCCTATATATCATCAAACCTCTATTTTTCCAACTCAATCTCAAAACATCATCAACAACTCATTTAACATTCATCCATCATACAATTTTCCTGTTAATCAAACCTCAACTTTACTCCTCCCTAACAAAATGCCTCTCCATCAATCTCACCCACAAGTTTACTCTCCATCCGGGACATTTGTTGGAACTGCTTCTTCAAAAAGCACAAGCATTTCGGATTATGATTGGTATCATAAATACATGAAAAAGGAACCTCAGCTACTTCAGTTACCCAACAATTCTTTTCCGGTATTGGATTCTGACAAAACAAGTCAAATGAACAACAATTCACAGCAGACACATAATGTTGTTGAGCCATTTATTGTTGGATCTGCTTCTTCTTTGGAAGATAAAAACACCAATATTTGGTGTGATGCTAATAGCTTTATTGACTTTCCGGTTGAAGAAACAGATCCTAAGACTTTAGAGGATATTGCAAATATGAGCAGATGCATAGAAGAAGAGGATCTCATTAATGTTTGGAGGTACTTCCAAGAAGAGGATGTCACTAATGTTATGCAGCAGCCTTCATGTTGTTAA 1128 0.3785 MAAVVIDGMAKRKKDEDNDNDSLSSYNNTKKRRVVWSDDLHAKFVEAVNLLGLHDVVPKKIVGLMNVDGITSKHVASHLQKYRLGKKKAAHKVPSTLTQQPTQSQYINIHPSNLLLHNKKCVDKVPSTLVQPTQSQNIHNNLLNIHPSYKFPVNETSTLLLPNKMPLHQLNMSGVAPSPPSSTFPIYHQTSIFPTQSQNIINNSFNIHPSYNFPVNQTSTLLLPNKMPLHQSHPQVYSPSGTFVGTASSKSTSISDYDWYHKYMKKEPQLLQLPNNSFPVLDSDKTSQMNNNSQQTHNVVEPFIVGSASSLEDKNTNIWCDANSFIDFPVEETDPKTLEDIANMSRCIEEEDLINVWRYFQEEDVTNVMQQPSCC 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05780 375 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 28 87 IPR017930 -
Vifa1g05780 375 MobiDBLite consensus disorder prediction 1 26 - -
Vifa1g05780 375 Gene3D - 27 89 - -
Vifa1g05780 375 Pfam Myb-like DNA-binding domain 33 83 IPR001005 -
Vifa1g05780 375 FunFam Two-component response regulator 27 90 - -
Vifa1g05780 375 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 13 293 IPR044841 GO:0003700|GO:0006355
Vifa1g05780 375 SUPERFAMILY Homeodomain-like 29 88 IPR009057 -
Vifa1g05780 375 NCBIfam myb-like DNA-binding domain, SHAQKYF class 31 85 IPR006447 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05780 Vifa-Chr1 901281612 901283331 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05780 10 84 Response Regulator Gene Family AT3G16857 52.564 5.47e-18 83.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vifa1g05780 Myb_DNA-binding 8.2e-06 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05780 - K14491 psat:127108097 248.825