Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05761 ATGGCTGAAGCTTCTGATGTTAAAGCTTCATTGCCTGAAGCAGAGAAGAAGAAGGAACAAAGCTTACCCTTTTATCAGCTTTTCTCATTTGCTGATAAATATGATTGGATTCTTATGATCTCAGGAAGTATTGGTGCCATTATTCATGGCTCTTCTATGCCTGTTTTTTTCCTTCTCTTTGGTCAAATGGTTAACGGTTTTGGTAAAAACCAAATGGATTTGAAGAAAATGACTGATGAAGTTTCCAAGTATGCACTTTACTTTGTGTACCTTGGCCTTGTGGTTTGTATATCATCATATGCAGAGATTGCATGTTGGATGTATACTGGAGAGAGGCAAGTTAGCACCTTGAGGAAGAAGTATTTAGAGGCAGTGTTGAAACAAGATGTTGGTTTCTTTGATACAGATGCTAGAACTGGAGATATAGTTTTCAGTGTTTCAACTGATACACTTTTAGTCCAAGATGCTATTAGTGAGAAGGTTGGGAATTTCATACATTATCTATCAACTTTTCTAGCTGGGCTTGTGGTTGGTTTTGTGTCAGCATGGAGATTAGCACTTCTTAGTGTTGCAGTGATTCCTGGAATTGCTTTTGCTGGTGGTTTATATGCTTATACACTCACAGGACTTACGTCGAAGAGCCGTGAATCGTATGCAAATGCTGGCATAATTGCTGAACAGGCGATTGCTCAAGTTCGAACGGTTTACTCTTACGTTGGTGAGAGTAAGGCGTTGAATTCTTATTCAGATGCAATACAAAACACATTGAAGCTTGGATACAAGGCGGGAATGGCTAAAGGTTTAGGCTTAGGTTGCACATACGGTATAGCTTGCATGTCGTGGGCGCTAGTTTTTTGGTATGCCGGTGTTTTTATCAGGAACGGCCAAACCGATGGAGGCAAGGCATTCACAGCTATTTTCTCTGCCATTGTCGGTGGAATGAGTTTGGGTCAGTCGTTTTCGAACTTAGGTGCTTTTAGCAAAGGCAAAGCAGCCGGATTCAAATTGATGGAAATCATCAAGCAGAGACCAACAATTGTGGAAGATCAATTGGAAGGAAAGTGCTTAGCCGAGGTTAATGGAAACATTGAATTTAAGGATGTTAGTTTTAGCTATCCATCAAGACCGGACGTGATGATTTTTCGGAATTTCTCAATCTTTTTCCCTGCTGGTAAAACCGTTGCGGTTGTTGGTGGTAGTGGATCCGGAAAGAGTACCGTTGTTTCGTTAATTGAAAGGTTCTATGATCCTAATGAAGGTCAGGTTTTTCTCGATAATGTGGACATTAAGACGCTACAACTAAAATGGTTACGCGATCAAATTGGTTTGGTGAATCAAGAGCCTGCACTTTTTGCAACTACCATTCTTGAAAACATACTCTATGGAAAATCCGATGCAACAATAGATGAAGTAGAAGCCGCAACTTCTGCTGCAAATGCTCATAGTTTTATTACATTGCTTCCTAATGGCTACAACACTCAGGTTGGAGAGCGAGGAGTTCAATTATCAGGGGGACAAAAGCAAAGGATTGCAATTGCGGAGAGCAATGTTGAAAAACCCGAAGATCCTTCTCTTAGACGAAGCAACTAG 1590 0.4069 MAEASDVKASLPEAEKKKEQSLPFYQLFSFADKYDWILMISGSIGAIIHGSSMPVFFLLFGQMVNGFGKNQMDLKKMTDEVSKYALYFVYLGLVVCISSYAEIACWMYTGERQVSTLRKKYLEAVLKQDVGFFDTDARTGDIVFSVSTDTLLVQDAISEKVGNFIHYLSTFLAGLVVGFVSAWRLALLSVAVIPGIAFAGGLYAYTLTGLTSKSRESYANAGIIAEQAIAQVRTVYSYVGESKALNSYSDAIQNTLKLGYKAGMAKGLGLGCTYGIACMSWALVFWYAGVFIRNGQTDGGKAFTAIFSAIVGGMSLGQSFSNLGAFSKGKAAGFKLMEIIKQRPTIVEDQLEGKCLAEVNGNIEFKDVSFSYPSRPDVMIFRNFSIFFPAGKTVAVVGGSGSGKSTVVSLIERFYDPNEGQVFLDNVDIKTLQLKWLRDQIGLVNQEPALFATTILENILYGKSDATIDEVEAATSAANAHSFITLLPNGYNTQVGERGVQLSGGQKQRIAIAESNVEKPEDPSLRRSN 529
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05761 529 SUPERFAMILY ABC transporter transmembrane region 27 348 IPR036640 GO:0005524|GO:0016020
Vifa1g05761 529 PANTHER ABC TRANSPORTER B FAMILY 7 520 IPR039421 -
Vifa1g05761 529 CDD ABC_6TM_Pgp_ABCB1_D1_like 39 336 - -
Vifa1g05761 529 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 42 328 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05761 529 Pfam ABC transporter transmembrane region 44 313 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vifa1g05761 529 Gene3D ABC transporter type 1, transmembrane domain 26 352 IPR036640 GO:0005524|GO:0016020
Vifa1g05761 529 FunFam ABC transporter B family member 1 26 362 - -
Vifa1g05761 529 Pfam ABC transporter 382 520 IPR003439 GO:0005524
Vifa1g05761 529 Gene3D - 353 520 IPR027417 -
Vifa1g05761 529 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 356 520 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05761 Vifa-Chr1 896164003 896167163 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05761 18 521 Calmodulin-binding Proteins AT2G36910 35.573 2.84e-88 294
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05761 K05658 - gmx:100797124 939.102