Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05760 ATGTCTCCTGGTGTGGTTGTTACGGAGGAGGAAGGGCGGAGCAAACTGTCATCGACGGCAGTTTCTGCTTCTACACAATGCTTAGACCGATTCTCTCAAAATGGTGTTGTTGATTTGAAGGAACGGAATTACCTGGGGTTGTCGGATTGTTCATCAGTGGACAGTTGTGATTCATCTCTTCCAAGCTTGTGTGGTGAGAAAAAGGGGAATTTGAATTTGAAGGCTACTGAGTTGAGGTTGGGTCTTCCTGGATCTCAGTCACCTGAAAGGGATTTGGATTTTTACTCAACAAAGCTTGATGAGAAACCACTGTTCCCTTTGCTTCCTGCTAAAGATGGAATGCAAAAGACTGTTGTTTCGGGGAATAAGAGAGGGTTTGCTGATACCGTGGATGGGTTTTCTCAGGGGAAGTTTAATGTTAATACAGGGATTAACGCGATGCTATCGCCTAGACCTGTTGGAGCACAGCCTAACACCGTGAAAGAAGTGCCGAGTAAGGTGTTGCAGGAAAGGCCTTGTGCCGCTAGAGGAACTGGACTTAATCATGCAGGTGCTGCATCTATTGGTACACAGCCTCCAGCTTCTAAGGCACAAGTTGTTGGTTGGCCTCCTATAAGATCATTTAGGAAAAACTCCATGGCCACTGCTTCCAAGAACAACAATGATGAAGTGGATGGAAAACCAGGTCCCACTGCACTCTTTGTGAAGGTCAGTATGGATGGTGCTCCCTATCTTAGGAAGGTTGATCTAAGAACTTATACAGCATATCAGGAACTTTCTTCTGCCCTTGAGAAGATGTTCAGCTGTTTTACCCTAGGTCAGTGTGGTTCCCATGGAGCTCCAGGTAGAGAAATGTTGAGTGAGAGCAAGCTAAGGGACCTTTTGCATGGTTCAGAATATGTTCTCACCTATGAAGATAAAGATGGAGACTGGATGCTTGTAGGGGATGTACCATGGGAAATGTTCATTGATACTTGCAGAAGGCTGAAAATCATGAAGGGTTCTGATGCCATTGGCTTAGCTCCCAGGGCCATGGAAAAGTCTAAAAGCAGGAGTTAG 1059 0.4561 MSPGVVVTEEEGRSKLSSTAVSASTQCLDRFSQNGVVDLKERNYLGLSDCSSVDSCDSSLPSLCGEKKGNLNLKATELRLGLPGSQSPERDLDFYSTKLDEKPLFPLLPAKDGMQKTVVSGNKRGFADTVDGFSQGKFNVNTGINAMLSPRPVGAQPNTVKEVPSKVLQERPCAARGTGLNHAGAASIGTQPPASKAQVVGWPPIRSFRKNSMATASKNNNDEVDGKPGPTALFVKVSMDGAPYLRKVDLRTYTAYQELSSALEKMFSCFTLGQCGSHGAPGREMLSESKLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFIDTCRRLKIMKGSDAIGLAPRAMEKSKSRS 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05760 352 Pfam AUX/IAA family 76 343 IPR033389 -
Vifa1g05760 352 SUPERFAMILY CAD & PB1 domains 230 333 - -
Vifa1g05760 352 FunFam Auxin-responsive protein 227 344 - -
Vifa1g05760 352 Gene3D - 229 346 - -
Vifa1g05760 352 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 71 339 IPR003311 GO:0005634|GO:0006355
Vifa1g05760 352 ProSiteProfiles PB1 domain profile. 232 336 IPR000270 GO:0005515
Vifa1g05760 352 MobiDBLite consensus disorder prediction 178 201 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05760 Vifa-Chr1 896065864 896069598 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05760 246 332 B3 DNA Binding Superfamily AT1G19220 32.184 6.41e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vifa1g05760 AUX_IAA 7.9e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05760 K14484 - gmx:547502 552.362