Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05750 ATGGAGCTTTCTCAGCTTGGTTTCCTTGAGGAACTATTAGCTCCAAGAAAAGACACATGGAGTACTTTATCCACCGGTTTAAACGACCTACTTCTTCCCAATGGTTGGAACTTGGACTCATTTGATGAAAATCTACTCCTCAACCCATCTCTAAACCCTTCATTTGCTTCGTTTTCAACTCCACTAGACCATAGATTTGAATGCTCTTATGGAACTGATGCTGTTTCATACCCTTTTGTTGATGGGTTCACTGTTCCAGAGCTTGATGATTCAACTCCACTTTTACCACAAGAGGGTGTTGAAGAGTTTGGTTTTGTTGGAAGTGAGGATAAGGGTCTGGAAGAGAGTACTAAAATTAGCTGTAAAGTTGAGGAACAAGTGAGTGAGATTCCTGTTTTTAACATGGGTTTGTGTGGTGGTAATGGTCAGAAGAAAGGTAAATCGAAAAGGGTTGAAGGACAGCCTTCGAAGAATCTTATGGCGGAAAGAAGGAGGAGAAAGCGGTTGAATGATAGGCTTTCCATGCTTAGGTCAATTGTCCCTAAGATCAGTAAGATGGACAGAACATCGATTCTCGGAGACACAATTGATTACATGAAAGAGCTTCTTGAAAGGATTGGTAAGTTACAAGAAGAAATGGATGAAGGAACAGATCAGATAAATCTTTTGGGAGTTTCTAAGGAGTTGAAGCCAAATGAAGTCATGGTAAGAAATTCCCCTAAGTTTAATGTTGAGAAGAGAGATCAAGACACAAGGATTAGCATCTGCTGTGCCACAAAGCCAGGTTTATTACTGTCAACAGTGAACACATTAGAAGCATTAGGCCTCGAGATTCACCAATGTGTCATAAGCAGTTTCAATGATTTTTCATTGCAAGCATCTTGCTCAGAGGTAGCTGGACAGCGAAATTGTATGAACCCTGAAGAGGTAAAGCAGTCACTGTTCAGGAATGCAGGTTATGGTGGGAGGTGTCTCTAG 978 0.411 MELSQLGFLEELLAPRKDTWSTLSTGLNDLLLPNGWNLDSFDENLLLNPSLNPSFASFSTPLDHRFECSYGTDAVSYPFVDGFTVPELDDSTPLLPQEGVEEFGFVGSEDKGLEESTKISCKVEEQVSEIPVFNMGLCGGNGQKKGKSKRVEGQPSKNLMAERRRRKRLNDRLSMLRSIVPKISKMDRTSILGDTIDYMKELLERIGKLQEEMDEGTDQINLLGVSKELKPNEVMVRNSPKFNVEKRDQDTRISICCATKPGLLLSTVNTLEALGLEIHQCVISSFNDFSLQASCSEVAGQRNCMNPEEVKQSLFRNAGYGGRCL 325
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05750 325 PANTHER TRANSCRIPTION FACTOR SCREAM2-RELATED 128 319 - -
Vifa1g05750 325 Gene3D - 144 219 IPR036638 GO:0046983
Vifa1g05750 325 CDD ACT_UUR-ACR-like 251 292 - -
Vifa1g05750 325 Pfam Helix-loop-helix DNA-binding domain 159 202 IPR011598 GO:0046983
Vifa1g05750 325 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 156 221 IPR036638 GO:0046983
Vifa1g05750 325 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 153 202 IPR011598 GO:0046983
Vifa1g05750 325 Coils Coil 199 219 - -
Vifa1g05750 325 SMART finulus 159 208 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05750 Vifa-Chr1 893950195 893951732 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05750 29 325 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G10570 48.265 2.67e-75 232
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vifa1g05750 HLH 6.8e-10 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05750 - - gmx:100806571 503.827