Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05749 ATGGAAGAAAGAACTGAGATGGATAATATGAAGGTTGATGATTTGATGCCTGGTTTTCGTTTTCATCCCACAGATGAAGAACTTGTTGCTTTTTATCTCAAAAGAAAAATTCAACAAAAATCTCTTCCTATTGAACTTATTAAGCAAGTTGATATTTACAAATATGATCCATGGGACCTTCCAAAGCTTGCAAGTAGTGGTGAGAAAGAATGGTATTTCTATTGTCCAAGGGACAGAAAATACAGAAACAGTTCAAGGCCTAATAGGGTTACAAGAGCTGGATTTTGGAAGGCCACAGGAACTGATAGACCTATCTACTCATCAGATGGAAAATGCATTGGTTTGAAGAAGTCACTTGTCTTCTATAAAGGTAGAGCTGCCAAAGGTACCAAAACTGATTGGATGATGCATGAATTTAGGTTACCTTCCATTTCAGATTCATCAACTTCTCCTCCCAAAAAATTCTCAGACAAAAGTTTCTCTCCAAATGATTCATGGGCAATTTGTAAGGATTTTCAAGAAAACAAATTCTCTTTCCATGGTGCAAAAAGCTTTATCTCATCCTTGGATCTCTCAATTACCAGGAAATATGGTATCTGA 600 0.3633 MEERTEMDNMKVDDLMPGFRFHPTDEELVAFYLKRKIQQKSLPIELIKQVDIYKYDPWDLPKLASSGEKEWYFYCPRDRKYRNSSRPNRVTRAGFWKATGTDRPIYSSDGKCIGLKKSLVFYKGRAAKGTKTDWMMHEFRLPSISDSSTSPPKKFSDKSFSPNDSWAICKDFQENKFSFHGAKSFISSLDLSITRKYGI 199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05749 199 SUPERFAMILY NAC domain 10 170 IPR036093 GO:0003677|GO:0006355
Vifa1g05749 199 ProSiteProfiles NAC domain profile. 15 174 IPR003441 GO:0003677|GO:0006355
Vifa1g05749 199 FunFam NAC domain-containing protein 35 24 177 - -
Vifa1g05749 199 Pfam No apical meristem (NAM) protein 17 141 IPR003441 GO:0003677|GO:0006355
Vifa1g05749 199 PANTHER PROTEIN CUP-SHAPED COTYLEDON 2-RELATED 14 175 - -
Vifa1g05749 199 Gene3D NAC domain 24 178 IPR036093 GO:0003677|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05749 Vifa-Chr1 893314125 893315153 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05749 1 189 NAC Transcription Factor Family AT1G26870 70.466 2.27e-90 269
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NAC Vifa1g05749 NAM 1.4e-38 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05749 - - mtr:25495303 332.413