Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05748 ATGGCAACCTCAACAATGTCTCTCTCTTCTTCATCACTGGTTGGAAAGGCAATCAAGCTTTCCCCGTCCACTCAAGACCTTGGTGTGGGAAGAGTCACAATGAGGAAAACAGCCACTAAGAAAGTTTCCTCTGGAAGTCCATGGTATGGACCAGACCGTGTCAAATACTTGGGTCCATTCTCCGGTGAAGCTCCATCCTACCTCACTGGTGAGTTTCCCGGAGACTACGGTTGGGACACTGCTGGACTTTCTGCTGATCCAGAGACATTTTCCAAAAATCGTGAACTAGAGGTCATCCACAGCAGGTGGGCTATGTTAGGAGCCTTAGGATGTGTCTTTCCCGAGCTCTTGGCTCGCAACGGAGTCAAATTCGGCGAGGCTGTGTGGTTCAAGGCAGGATCCCAAATCTTCAGTGAGGGTGGACTTGACTACTTGGGTAACCCAAGCCTTGTCCATGCACAGAGCATTCTTGCAATATGGGCAACACAAGTTATCTTAATGGGAGCTGTTGAAGGTTACCGCATTGCTGGGGGACCTCTTGGAGAGGTGGTTGACCCATTGTACCCAGGTGGCAGCTTTGATCCATTAGGCCTTGCAGAAGATCCAGAAGCATTCGCAGAGTTGAAGGTGAAAGAACTGAAGAATGGTAGGTTAGCCATGTTCTCAATGTTTGGATTCTTTGTTCAAGCTATTGTGACAGGAAAAGGACCTATAGAAAATCTCGCTGACCATCTTGCAGACCCAGTTAACAATAACGCTTGGGCATATGCCACAAACTTTGCTCCTGGAAAGTGA 795 0.483 MATSTMSLSSSSLVGKAIKLSPSTQDLGVGRVTMRKTATKKVSSGSPWYGPDRVKYLGPFSGEAPSYLTGEFPGDYGWDTAGLSADPETFSKNRELEVIHSRWAMLGALGCVFPELLARNGVKFGEAVWFKAGSQIFSEGGLDYLGNPSLVHAQSILAIWATQVILMGAVEGYRIAGGPLGEVVDPLYPGGSFDPLGLAEDPEAFAELKVKELKNGRLAMFSMFGFFVQAIVTGKGPIENLADHLADPVNNNAWAYATNFAPGK 264
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05748 264 FunFam Chlorophyll a-b binding protein, chloroplastic 55 257 - -
Vifa1g05748 264 Gene3D Chlorophyll a/b binding protein domain 55 257 - -
Vifa1g05748 264 PANTHER CHLOROPHYLL A/B BINDING PROTEIN 2 264 IPR001344 GO:0009765|GO:0016020
Vifa1g05748 264 SUPERFAMILY Chlorophyll a-b binding protein 47 261 - -
Vifa1g05748 264 Pfam Chlorophyll A-B binding protein 64 230 IPR022796 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05748 Vifa-Chr1 893218338 893219132 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05748 1 264 Chloroplast and Mitochondria Gene Families AT1G29930 88.390 1.10e-171 473
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05748 K08912 - gmx:547819 501.516