Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05738 ATGAACACAAAACATACCAAAGGTCATGAAACTGTGATTGACATAAAGCATAAGCCTGTGAGTTTCACTGGTGGACTTGAGTTTGAGTCTCTTACTTATACGGTCGTAAAGAAGAAGAGAATTGATGGAAAGTTTTCGAACGAAGATGTGGATTTGTTGCATGATATAACTGGTTATGCACCAAAGGGTTGTATCACTGCTGTAATGGGACCAAGTGGTGCTGGAAAATCAACCTTGTTGGATGGACTTGCTGGTAGGATTGCAAGTGGGAGTCTTAAAGGGAAAGTTTCATTGGATGGGAATAGTGTGAATGCGAGCTTGATTAAGAGAACTTCTGCTTATATTATGCAAGAAGATAGGCTTTTTCCTATGCTTACTGTCTATGAAACTTTGATGTTTGCTGCTGATTTCAGATTGGGGCCATTGTCAGTTGCTGATAAGAGGCAGAGAGTTGAGAAGCTTATTGAACAACTTGGCTTATCATCATCTAGGAACACCTACATAGGAGATGAAGGAACAAGAGGAGTCTCAGGCGGAGAGCGTCGCAGAGTCTCAATAGGGGTAGACATAATCCATGGACCTTCACTCCTTTTCCTAGATGAACCAACTTCAGGACTAGACTCAACAAGTGCTCTCAGTGTGATTGAAAAAGTACATGACATAGCAAGAAATGGCAGCACAGTTATTCTCACAATCCACCAACCTTCATCAAGAATCCAATCACTCCTTGACCATCTCATCATCCTTGCAAGAGGACAACTCATGTTTCAAGGATCATTCAAAGATGTAACTCTCCATTTGAACCGAATGGGCCGAAAAGTTCCGAAAGGAGAGAACCCAATTGAGAATCTCATTGATGTGATACAAGAGTATGATCAGTGTGATGTTGTTGGTGTTGAGGTGCTAGCTGAGTTTGCACGTACCGGAATGAAACCACCCCTTTTAAGTGATATGGAGGAAATAATTTCAATCACTAACTCTGTCGCGCCTTCGCCTTCTGTGCATAGAGGCTCTAGAAATGATGAAAAATCTCAAGACTTCTCTTATTCATCACAAATTAGTAGAAGGAGTTTGAATGATGAGTTTGATCATAGTCTTAGAAGTCCTTATAATAACACACCTATGTCTTGGAGTGCAAGTAATAGTGCAGCTTTCTTCAAATTCACACCCTCAAGACTTAAAAATGAGAACAAGGTTCAGAAGCCTTCAAGCCATGCTTCCCCTTCCCAGGGCTACTACACATACTCAAGTGAAATCCTTCCAGCTACTCCAACACCACATAGCAGTGACTACACAGTGAATGAAAATGACTACCTCACACCGACAAATGGCTCGCCAGAACATCTAGGCCCAAAGTTTGCAAATTCCTACCTAGGAGAGACATGGATCCTAATGCGCCGCAACTTCATAAACATTCGGCGCACCCCTGAGCTTTTCCTATCAAGACTAATGGTCCTCACCTTCATGGGATTCATGATGGCCACAATGTTCCACAATCCAAAAGAAACCTTACAAGGAATCACAAACCGTCTCAGTTTCTTCATCTTCACAGTTTGTCTCTTTTTCTTCTCTTCCAACGACGCCGTCCCAGCATTCATCCAAGAGAGGTTCATTTTCATCCGCGAAACTTCGCACAATGCCTATAGAGCTTCTTCCTACACCATAGCTAGCTTAATCACTCACATGCCGTTTCTTGCGCTCCAAGCTTTAGCTTACGCAGGCATTGTTTGGTTTGCTTTACAACTCAGAGGCCCTTTTATATACTTCTTCCTCGTTCTCTTCATTTCTCTCCTTTCAACAAACTCATTTGTCGTGTTTGTGAGTTCGGTTGTTCCAAACTATATCTTGGGCTATGCTGCAGTCATTGCCTTCACCGCATTATTCTTCTTGTTCTGTGGATATTTCTTGAGCAGCGAGGATATTCCGCTTTATTGGCGTTGGATGAACAAGATTTCGACTATGACGTACCCTTACGAAGGACTCTTGATGAATCAATATCAAACTAATGATACTTTTGGAACAAATGATGGAGTACCTGTTACTGGTTTTGATATATTGAATAGTCTTCATATTGGTACTGAAGAGTTTAAGAAGAGGAATAATGTGCTTATAATGTTAGGTTGGGCTGTGTTATATAGGATTTTATTTTACATTATTCTTCGTTTTGCATCGAAAAATCAAAGGTCCTAG 2190 0.4123 MNTKHTKGHETVIDIKHKPVSFTGGLEFESLTYTVVKKKRIDGKFSNEDVDLLHDITGYAPKGCITAVMGPSGAGKSTLLDGLAGRIASGSLKGKVSLDGNSVNASLIKRTSAYIMQEDRLFPMLTVYETLMFAADFRLGPLSVADKRQRVEKLIEQLGLSSSRNTYIGDEGTRGVSGGERRRVSIGVDIIHGPSLLFLDEPTSGLDSTSALSVIEKVHDIARNGSTVILTIHQPSSRIQSLLDHLIILARGQLMFQGSFKDVTLHLNRMGRKVPKGENPIENLIDVIQEYDQCDVVGVEVLAEFARTGMKPPLLSDMEEIISITNSVAPSPSVHRGSRNDEKSQDFSYSSQISRRSLNDEFDHSLRSPYNNTPMSWSASNSAAFFKFTPSRLKNENKVQKPSSHASPSQGYYTYSSEILPATPTPHSSDYTVNENDYLTPTNGSPEHLGPKFANSYLGETWILMRRNFINIRRTPELFLSRLMVLTFMGFMMATMFHNPKETLQGITNRLSFFIFTVCLFFFSSNDAVPAFIQERFIFIRETSHNAYRASSYTIASLITHMPFLALQALAYAGIVWFALQLRGPFIYFFLVLFISLLSTNSFVVFVSSVVPNYILGYAAVIAFTALFFLFCGYFLSSEDIPLYWRWMNKISTMTYPYEGLLMNQYQTNDTFGTNDGVPVTGFDILNSLHIGTEEFKKRNNVLIMLGWAVLYRILFYIILRFASKNQRS 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05738 729 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 26 276 IPR003439 GO:0005524
Vifa1g05738 729 Pfam ABC-2 type transporter 233 290 IPR043926 GO:0140359
Vifa1g05738 729 Pfam ABC-2 type transporter 461 666 IPR013525 GO:0016020|GO:0140359
Vifa1g05738 729 CDD ABCG_EPDR 26 258 - -
Vifa1g05738 729 Gene3D - 35 271 IPR027417 -
Vifa1g05738 729 MobiDBLite consensus disorder prediction 329 354 - -
Vifa1g05738 729 Pfam ABC transporter 53 204 IPR003439 GO:0005524
Vifa1g05738 729 ProSitePatterns ABC transporters family signature. 176 190 IPR017871 GO:0005524|GO:0016887
Vifa1g05738 729 FunFam ABC transporter G family member 6 36 274 - -
Vifa1g05738 729 SMART AAA_5 62 260 IPR003593 GO:0016887
Vifa1g05738 729 PANTHER ABC TRANSPORTER G FAMILY MEMBER 28 20 715 - -
Vifa1g05738 729 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 46 266 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05738 Vifa-Chr1 891598189 891600805 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05738 15 290 Calmodulin-binding Proteins AT2G36910 27.208 1.24e-13 73.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05738 K05681 - gmx:100804809 1149.42