Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05737 ATGATGGAGCTACAAGCTATTTCGATAATAAGATTGGTTGTGGCATGTGTTCTTTGTTTGTGTATATTTATCAGATCAGGTTCTTCTGCAACTGAAGGGTTTGAGAGCATAGCATGCTGTGCTGGTTCAAATTACACAGATCCAAAAACAAATCTAAATTACACAACAGATTATAAGTGGTTCTCTGATAAAAGTAGTTGCAGACAAATACCGGAAATTCTGTTAAGCCACAGAAGCAATGTAAACTTTCGACTGTTTGATATATATGAAGGAAAGAGGTGTTACAATTTGCCAACAATTAAGGATCAAGTGTATCTGATAAGGGGAATATTTCCATTTGATAGTGTAAATTCTTCATTTTATGTTTCAATCGGGGCAACAGAACTAGGCGAAGTGACATCGTCTAGGCTCGAGGACTTGGAAATTGAGGGAGTTTTCAGAGCCTCAAAAGACAACATAGACTTCTGCTTATTGAAGGAGGATGCCAATCCCTTCATTTCTCAAATTGAATTGAGGCCGTTACCGGAAGAATACCTACATGATTTCTCTACCAGTGTTTTAAAAGTGATTAGCAGAAATAATCTTTGTGGCATAGAAGCTGACATCAGATTCCCTGTTGACCAAAACGATAGAATCTGGAAAGCAACTTCAACTCCATCGTATGCTATTCCACTTTCTTTCAATGTCAGTAATGTTGACCTCAACGGCAAAGTGACACCTCCTCTACAAGTCCTACAAACAGCTCTTACTCACTCTGAGCGATTGGAGTTCGTCCACGACGGCCTCGAGACCGATGATTATGAATACTCTGTGTTACTCTTTTTTCTTGAACTAAATGATACTCTCAAAGCAGGACAAAGGGTGTTTGACATCTATCTAAACAGTGAGATTAAAAAGGAGAGTTTTGATGTATTGGAAGGAGGGTCCGAGTACAGTTACACTGTCTTGAACATTACAGCAAATGGATCACTCAATATAACCTTAGTCAAGGCATCTGGATCTAAGTTTGGACCCCTTTTGAATGCCTACGAGATCCTGCAGGCGCGACCATGGATCGATGAGACCGACCAAACAGATGTGGAAGTTATTCAGAAGATGAGAAAAGAACTGCTGCTGCAAAACCAAGACAATGAAGCATTGGAGAGTTGGAGTGGAGATCCTTGTATGCTTTTTCCCTGGAAAGGGGTCGCTTGTGATGGTTCAAATGGTTCATCTGTCATCACTAAGCTGGATCTTTCCTCCAGTAATCTCAAAGGAACAATTCCTTCCAGTGTCACTGAGATGGCCAAATTACAAATACTGAACCTGAGCCACAACCATTTTGATGGTTATATCCCCTCGTTTCCATCGTCCTCCTTGTTGATATCAGTAGATCTGAGCTACAATGACCTAACGGGACAGCTTCCAGAATCCATTATCTCACTGCCACATTTAAACTCATTATATTTTGGCTGCAATCAACACATGAGCGACGATGATGAATCCAAATTCAACAGTTCACTAATCAATACAGATTATGGGAGATGCAAAGCAAAAAACCCAAAATTTGGACAAGTATTCATGATTGGAGCTATTACAAGTGGATCAATTTTGATTACTTTGGCTGTTGGAATTCTATTTTTTTGCCGTTATAGACACAAGTCGATTACTTTGGAAGGATTTGGTGGAAAGACATATCCAATGGCAACAAATATAATTTTCTCCTTGCCAAGCAAAGACGACTTCTTCATAAAGTCTGTATCAGTTAAACCATTCTCTTTGGAGTATATAGAGTTGGCAACAGAGAAGTACAAAACTTTGATAGGTGAAGGAGGATTTGGCTCTGTTTATCGGGGCACTCTAGACGATGGTCAAGAAGTGGCAGTGAAAGTCCGGTCAGCTACATCAACTCAGGGAACCCGAGAATTTGACAATGAGCTAAACCTACTTTCAGCTATACAACATGAGAATCTGGTGCCTCTTCTTGGTTACTGTAATGAATATGATCAACAAATTCTTGTGTATCCTTTCATGTCCAATGGATCTTTGCTAGATAGACTATATGGGGAACCAGCAAAGAGAAAAATACTAGACTGGCCAACTAGACTCTCTATTGCTCTAGGAGCAGCTCGAGGTTTGGCATATCTTCACACATTTCCTGGACGATCTGTAATACACAGGGACGTAAAGTCGAGCAATATACTACTGGACCATAGCATGTGTGCTAAGGTTGCAGACTTTGGTTTCTCAAAATATGCTCCTCAGGAAGGAGACAGTTATGTTTCCCTTGAAGTAAGAGGAACCGCAGGGTATCTGGATCCTGAGTACTACAAAACCCAGCAATTATCTGAAAAGAGTGATGTTTTCAGCTTTGGCGTGGTTCTACTAGAAATTGTAAGTGGACGGGAACCTCTCAATATAAAGAGACCACGAGTCGAGTGGAGCTTGGTTGAATGGGCTAAACCATACATAAGAGCATCAAAGGTGGATGAAATTGTAGATCCTGGCATCAAGGGAGGATATCATGCAGAGGCACTGTGGAGAGTGGTGGAAGTAGCACTGCAATGTCTTGAACCCTACTCAACATATAGGCCATGCATGGTTGATATTGTCCGCGAGTTGGAAGATGCTCTCATAATCGAAAACAATGCATCTGAATACATGAAATCAATTGACAGTCTCGGAGGATCCAACCGCTACTCAATTGTCATGGATAAAAGGGCGCTTCCCGCAACTACAACTACAGCAGAATCAACCATCACAGCTCAAAATGTGTCACACCCTCAACCGAGATAG 2775 0.4101 MMELQAISIIRLVVACVLCLCIFIRSGSSATEGFESIACCAGSNYTDPKTNLNYTTDYKWFSDKSSCRQIPEILLSHRSNVNFRLFDIYEGKRCYNLPTIKDQVYLIRGIFPFDSVNSSFYVSIGATELGEVTSSRLEDLEIEGVFRASKDNIDFCLLKEDANPFISQIELRPLPEEYLHDFSTSVLKVISRNNLCGIEADIRFPVDQNDRIWKATSTPSYAIPLSFNVSNVDLNGKVTPPLQVLQTALTHSERLEFVHDGLETDDYEYSVLLFFLELNDTLKAGQRVFDIYLNSEIKKESFDVLEGGSEYSYTVLNITANGSLNITLVKASGSKFGPLLNAYEILQARPWIDETDQTDVEVIQKMRKELLLQNQDNEALESWSGDPCMLFPWKGVACDGSNGSSVITKLDLSSSNLKGTIPSSVTEMAKLQILNLSHNHFDGYIPSFPSSSLLISVDLSYNDLTGQLPESIISLPHLNSLYFGCNQHMSDDDESKFNSSLINTDYGRCKAKNPKFGQVFMIGAITSGSILITLAVGILFFCRYRHKSITLEGFGGKTYPMATNIIFSLPSKDDFFIKSVSVKPFSLEYIELATEKYKTLIGEGGFGSVYRGTLDDGQEVAVKVRSATSTQGTREFDNELNLLSAIQHENLVPLLGYCNEYDQQILVYPFMSNGSLLDRLYGEPAKRKILDWPTRLSIALGAARGLAYLHTFPGRSVIHRDVKSSNILLDHSMCAKVADFGFSKYAPQEGDSYVSLEVRGTAGYLDPEYYKTQQLSEKSDVFSFGVVLLEIVSGREPLNIKRPRVEWSLVEWAKPYIRASKVDEIVDPGIKGGYHAEALWRVVEVALQCLEPYSTYRPCMVDIVRELEDALIIENNASEYMKSIDSLGGSNRYSIVMDKRALPATTTTAESTITAQNVSHPQPR 924
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05737 924 ProSiteProfiles Protein kinase domain profile. 595 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05737 924 Gene3D Phosphorylase Kinase; domain 1 567 670 - -
Vifa1g05737 924 Gene3D Ribonuclease Inhibitor 357 513 IPR032675 -
Vifa1g05737 924 FunFam Calmodulin-binding receptor-like cytoplasmic kinase 3 671 887 - -
Vifa1g05737 924 ProSitePatterns Serine/Threonine protein kinases active-site signature. 717 729 IPR008271 GO:0004672|GO:0006468
Vifa1g05737 924 Gene3D Transferase(Phosphotransferase) domain 1 671 884 - -
Vifa1g05737 924 FunFam Nodulation receptor kinase 564 670 - -
Vifa1g05737 924 CDD STKc_IRAK 601 868 - -
Vifa1g05737 924 Pfam Protein tyrosine and serine/threonine kinase 598 867 IPR001245 GO:0004672|GO:0006468
Vifa1g05737 924 Pfam Leucine rich repeat N-terminal domain 357 399 IPR013210 -
Vifa1g05737 924 PANTHER OS07G0107800 PROTEIN-RELATED 36 871 - -
Vifa1g05737 924 SMART serkin_6 595 872 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vifa1g05737 924 Gene3D - 193 349 - -
Vifa1g05737 924 SUPERFAMILY Protein kinase-like (PK-like) 575 867 IPR011009 -
Vifa1g05737 924 SUPERFAMILY L domain-like 377 490 - -
Vifa1g05737 924 ProSitePatterns Protein kinases ATP-binding region signature. 601 623 IPR017441 GO:0005524
Vifa1g05737 924 Pfam Malectin-like domain 42 346 IPR024788 -
Vifa1g05737 924 FunFam Leucine-rich repeat receptor-like kinase 359 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05737 Vifa-Chr1 891005693 891011163 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05737 6 874 Receptor kinase-like Gene Family AT1G67720 34.138 4.68e-135 426
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vifa1g05737 Malectin_like 1.1e-43 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05737 - - gmx:100781986 1456.43