Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05729 ATGAAATCGGTGATTGAAAGGTATAACAGTTTCAAGGAAGACCAAGTGACAAATCCAGAATCTGAAGTCAAGTTTTGGCAAAGGGAGTCTGAAATTTTAAGGCAGCAACTACAGACTCTACAAGAAAACCATCGGCAATTGATGGGAGGACAACTTTACGGTTTGAGCATCAGAAACCTACAAGATCTTGAGAGACAACTGGAACTTAGTCTCCAAGAAATCCGAATGAGAAAGGAGAAAATTCTGACAGACGAAATCCACGAGCTGAACCAAAAGGGAAACCTAATCCATCAAGAAAATGTGGAACTTTATACGAAGGTTTATGGCACAACAGATTCGGCCACACTTGCACCAAGCAAAAATGCATTTGCTCAGTTTCCATATGGCAGCGGCGGAGGAGAGTATCCACAAACATTATTTCAACTTCAGTTATGCCAGCCTGAGCAAGAACAGTACTGCGAAACCTCAGGTAGTGCAACTGCAACAAAATGA 492 0.4187 MKSVIERYNSFKEDQVTNPESEVKFWQRESEILRQQLQTLQENHRQLMGGQLYGLSIRNLQDLERQLELSLQEIRMRKEKILTDEIHELNQKGNLIHQENVELYTKVYGTTDSATLAPSKNAFAQFPYGSGGGEYPQTLFQLQLCQPEQEQYCETSGSATATK 163
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05729 163 Pfam K-box region 18 107 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vifa1g05729 163 Coils Coil 23 43 - -
Vifa1g05729 163 Coils Coil 57 80 - -
Vifa1g05729 163 ProSiteProfiles K-box domain profile. 23 113 IPR002487 GO:0003700|GO:0005634|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05729 Vifa-Chr1 890417655 890418526 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05729 1 158 MADS-box Gene Family AT2G22630 47.701 2.81e-44 144
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05729 K09264 - gmx:100795778 216.853