Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vifa1g05722 ATGGAATCTTGGAGTTACATCCCTGAAGAGAGAAGCTATTTGTTTTCTGATGAAATGGACTTTTCACTTGATGCTTTTATGAGAAGTCGAAAACCGTCTGTCGAATTGCAGAACAAATCTTCATGTAACATTGAAAGAGATGGATTTAAAAGTATGGAGTTTGTGGACTTGGGATTTCCCGACTTTTTGCAGAAGTCTTTTCATGGTAGCAAGCCGATGAAGACATCTGGGGCTGTTCATGGTTTGGTTCAGACATCAAGTTGTGAGCTAGATAGTAATAATTCTAGTAAAAGAGGGAACTCCTCTATCCGTGTTATTGCTTTTGATTCGTCTTTCAGGGAAGAAGATTATGAGTCAAAGCATTTAAGTTCTCTATTTGAATCGAAAAATCACGATTCTTCATTGATTGATTTGAAGCTAGGGAGATTACTAGATTGTCAAGGTGCAAGTAATGACAGAGATGCCAAAGCGTTCAGTTCCACGCCGATACATCAAACTGTGCTTTCAAAAAGAGCTCGCACTTCCACCTTACCTTCCCAGGCTCCTGTATGCCAAGTTTATGATTGTAATATGGATCTTAGCACCTCGAAAGATTACCACAAAAGGCATAAAGTTTGTGATGTACACTCCAAGACAGCTAAAGTTGTTGTCAATGGCGTTGAACAGAGGTTTTGTCAGCAGTGCAGCAGGTTCCATTTGGTAGCTGAGTTCGATGACGGTAAGCGCAGTTGTCGTAGGCGTTTAGCTGGACACAATGAACGCCGAAGGAAACCTCAGTTTGATTACATGACTAGTAAACAACACAAGATTCTAAAATCTTATCAAGGTACCAACAACTTTTCCTTTCAAGACATATTTCAAAGTGGAATCCTTTTCTCAGCAAAGCATGATCAAATCTCTCAAAGTGGACGTGTCAAACTAGAAGAGGAGCCAATTTGCAGCCCTCAACTAGAACCGCCCGCCACACTTGGTCACGATTTATCTAGTCGTGCTCTCTCTCTTCTGTCATCTCAGTCACATAATCCATCACGCCATGCAGCTGGAAATCCATTAGCTACCTCCCTTCTTTTTCACAGCATCCACGTGCAAGATAGTGATGACCAAGTTTCCAAAAATGAATCGTTGCCGCATGAGATAAACTCTAAGGGAGTTATCAAATCTGAAAATGGAGTTACTGTTGATTTGTTTCAACTGTCTTCTCATCTTCAACGAGTGGAGCAGCAAAGAAATTCTGTTTTGGTAAAGTGGGAAAATGAGGATTTCTGTTTCTCAACTGTGTGA 1281 0.4075 MESWSYIPEERSYLFSDEMDFSLDAFMRSRKPSVELQNKSSCNIERDGFKSMEFVDLGFPDFLQKSFHGSKPMKTSGAVHGLVQTSSCELDSNNSSKRGNSSIRVIAFDSSFREEDYESKHLSSLFESKNHDSSLIDLKLGRLLDCQGASNDRDAKAFSSTPIHQTVLSKRARTSTLPSQAPVCQVYDCNMDLSTSKDYHKRHKVCDVHSKTAKVVVNGVEQRFCQQCSRFHLVAEFDDGKRSCRRRLAGHNERRRKPQFDYMTSKQHKILKSYQGTNNFSFQDIFQSGILFSAKHDQISQSGRVKLEEEPICSPQLEPPATLGHDLSSRALSLLSSQSHNPSRHAAGNPLATSLLFHSIHVQDSDDQVSKNESLPHEINSKGVIKSENGVTVDLFQLSSHLQRVEQQRNSVLVKWENEDFCFSTV 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vifa1g05722 426 ProSiteProfiles Zinc finger SBP-type profile. 181 258 IPR004333 GO:0003677
Vifa1g05722 426 PANTHER SQUAMOSA PROMOTER-BINDING-LIKE PROTEIN 4 133 351 IPR044817 GO:0003677
Vifa1g05722 426 SUPERFAMILY SBT domain 182 263 IPR036893 GO:0003677|GO:0005634
Vifa1g05722 426 FunFam Squamosa promoter-binding-like protein 14 175 245 - -
Vifa1g05722 426 Gene3D - 175 245 IPR036893 GO:0003677|GO:0005634
Vifa1g05722 426 Pfam SBP domain 184 257 IPR004333 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vifa1g05722 Vifa-Chr1 889104971 889107334 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vifa1g05722 136 410 SBP-box Gene Family AT1G69170 42.492 3.53e-65 212
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF SBP Vifa1g05722 SBP 7.7e-31 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vifa1g05722 - - psat:127119704 737.258